visualize CNV data from targeted capture based sequencing data
☆35May 10, 2021Updated 4 years ago
Alternatives and similar repositories for reconCNV
Users that are interested in reconCNV are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CNV detection tool for targeted NGS panel data☆16Feb 28, 2022Updated 4 years ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆18Oct 5, 2019Updated 6 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Jun 30, 2020Updated 5 years ago
- This is the GPress, a framework for querying GTF, GFF3 and expression files in a compressed form.☆11Oct 5, 2023Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Python function for TMB snake plots☆16Feb 12, 2026Updated 2 months ago
- IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split …☆16Aug 22, 2023Updated 2 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆22Dec 14, 2021Updated 4 years ago
- A python tool to detect internal tandem duplication with robust variant allele frequency estimation☆12Feb 3, 2026Updated 2 months ago
- A software package for detection of copy number alterations from tumor samples☆12May 8, 2015Updated 10 years ago
- amplicon/smMIP mapping and analysis pipeline☆11Dec 8, 2022Updated 3 years ago
- sort genomic data☆36Nov 7, 2025Updated 5 months ago
- ☆16Aug 11, 2021Updated 4 years ago
- Structural variant caller for low-depth long-read sequencing data☆48Feb 5, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"☆308Updated this week
- Format CSV file as human readable table☆40Apr 13, 2021Updated 5 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Aug 24, 2022Updated 3 years ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆26Jan 28, 2026Updated 2 months ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated this week
- ☆13Feb 14, 2023Updated 3 years ago
- Targeted and non-targeted anticancer drugs and drug regimens☆30Mar 23, 2026Updated 3 weeks ago
- Decrypting somatic mutation patterns to reveal the evolution of cancer☆57Mar 10, 2021Updated 5 years ago
- Detection of CNVs (deletion/duplication) in target panel based NGS data☆16May 23, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance☆10Jan 21, 2025Updated last year
- Structural variant VCF annotation, duplicate removal and comparison☆37Oct 14, 2025Updated 6 months ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Feb 17, 2022Updated 4 years ago
- v2.x of the microassembly based somatic variant caller☆25Updated this week
- Deep learning-based structural variant filtering method☆39Nov 19, 2023Updated 2 years ago
- ☆10Mar 7, 2023Updated 3 years ago
- ☆15Apr 20, 2023Updated 3 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Jan 22, 2018Updated 8 years ago
- Concordance and contamination estimator for tumor–normal pairs☆59Oct 22, 2024Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Sep 25, 2019Updated 6 years ago
- ☆21Feb 13, 2020Updated 6 years ago
- SV genotyping with long reads☆40Jul 3, 2023Updated 2 years ago
- Pipeline for generating RNAseq-based cancer patient reports☆11Updated this week
- Parse samtools pileup file to get how many bases and what kind of bases are called☆14Apr 30, 2024Updated last year
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆62Dec 27, 2022Updated 3 years ago
- ☆11May 21, 2024Updated last year