maragkakislab / samql

Related projects ⓘ

Alternatives and complementary repositories for samql

• tk2 / RetroSeq
  RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…
  ☆65Updated 2 years ago
• ksahlin / ultra
  Long-read splice alignment with high accuracy
  ☆60Updated last month
• brentp / rare-disease-wf
  (WIP) best-practices workflow for rare disease
  ☆59Updated 4 months ago
• bioinformatics-centre / BayesTyper
  A method for variant graph genotyping based on exact alignment of k-mers
  ☆87Updated 5 years ago
• ydLiu-HIT / deSALT
  deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads
  ☆44Updated 2 years ago
• nanoporetech / pipeline-nanopore-denovo-isoforms
  Pipeline for de novo clustering of long transcriptomic reads
  ☆26Updated 2 years ago
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆34Updated last year
• brentp / pbr
  drunk on perbase pileups and lua expressions
  ☆17Updated last year
• cortes-ciriano-lab / savana
  Somatic structural variant caller for long-read data
  ☆50Updated 2 weeks ago
• bioinform / metasv
  MetaSV: An accurate and integrative structural-variant caller for next generation sequencing
  ☆54Updated 7 years ago
• annalam / seqkit
  Toolkit for manipulating FASTA and SAM files
  ☆17Updated 8 months ago
• brentp / indelope
  find large indels (in the blind spot between GATK/freebayes and SV callers)
  ☆39Updated 6 years ago
• fulcrumgenomics / guide-counter
  A better, faster way to count guides in CRISPR screens.
  ☆28Updated last month
• sbg / smart-variant-filtering
  ☆30Updated 3 years ago
• nilesh-tawari / ChronQC
  Manuscript describing ChronQC is now available online in Bioinformatics
  ☆17Updated 5 years ago
• ericminikel / minimal_representation
  Convert genetic variants to minimal representation
  ☆23Updated 6 years ago
• rvolden / Mandalorion-Episode-II
  Version II of Mandalorion
  ☆32Updated 5 years ago
• grocsvs / grocsvs
  Genome-wide reconstruction of complex structural variants
  ☆39Updated 2 years ago
• PacificBiosciences / bam2fastx
  Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.
  ☆36Updated last year
• PacificBiosciences / MethBat
  A battery of methylation tools for PacBio HiFi reads
  ☆28Updated 2 months ago
• PacificBiosciences / HiFiCNV
  Copy number variant caller and depth visualization utility for PacBio HiFi reads
  ☆38Updated 3 weeks ago
• brentp / tiwih
  simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.
  ☆44Updated last year
• nanoporegenomics / napu_wf
  WDL workflows for variant calling and assembly using ONT
  ☆28Updated last month
• tjparnell / biotoolbox
  Tools for querying and analysis of genomic data
  ☆27Updated 3 weeks ago
• jts / bri
  Bam Read Index - Extract alignments from a bam file by readname
  ☆24Updated 6 months ago
• KolmogorovLab / minda
  ☆14Updated 4 months ago
• BoutrosLaboratory / bamql
  Query language for filtering SAM/BAM reads
  ☆31Updated last month
• Psy-Fer / blue-crab
  crab go snap snap
  ☆33Updated last week
• brentp / vcfexpress
  expressions on VCFs
  ☆61Updated last month