Alternatives and similar repositories for scAdapt

Users that are interested in scAdapt are comparing it to the libraries listed below

• mhorlacher / rbpnet
  ☆18Updated last year
• marcottelab / protein_complex_maps
  Kdrew's scripts for handling protein complex map data
  ☆14Updated 5 months ago
• Carldeboer / CisRegModels
  Scripts for building computational models of gene regulation with tensorflow
  ☆11Updated 5 years ago
• Pandaman-Ryan / AgentBind
  ☆14Updated last year
• CostaLab / MOJITOO
  MOJITOO: a fast and universal method for integration of multimodal single cell data
  ☆11Updated last year
• CamaraLab / TDA-TCGA
  R package for the identification of cancer-associated mutated genes using gene expression and mutation data.
  ☆11Updated 4 years ago
• AprilYuge / ResPAN
  a light structured Residual autoencoder and mutual nearest neighbor Paring guided Adversarial Network for scRNA-seq batch correction
  ☆15Updated 2 years ago
• shmohammadi86 / SCINET
  ☆19Updated 4 years ago
• suinleelab / PAUSE
  Code for paper "Principled feature attribution for unsupervised gene expression analysis"
  ☆12Updated 2 years ago
• hemberg-lab / sc3s
  Single Cell Consensus Clustering with Speed
  ☆20Updated 2 years ago
• visze / sequence_cnn_models
  ☆13Updated 9 months ago
• goodarzilab / SwitchFinder
  ☆18Updated last year
• chenhcs / GIANT
  GIANT (Gene-based data Integration and ANalysis Technique) is a method for large-scale joint analyses of atlas-level single cell data.
  ☆14Updated 2 years ago
• MannLabs / proteomesoflife
  python based queries for the proteomesoflife neo4j network database
  ☆14Updated 5 years ago
• altoslabs / perturbench
  ☆56Updated last month
• epigen / KPNN
  Knowledge-primed neural networks
  ☆38Updated 2 years ago
• xiongxslab / Translatomer
  ☆24Updated 2 months ago
• y9c / m6A-SACseq
  🧪 Optimized protocol for m6A-SAC-seq
  ☆11Updated 5 months ago
• xypan1232 / IPMiner
  Predicting ncRNA-protein interaction using high-level features based on deep learning
  ☆15Updated 5 years ago
• chenhcs / DIFFUSE
  Deep learning based prediction of IsoForm FUnctions from Sequences and Expression
  ☆15Updated 3 months ago
• salbrec / seqQscorer
  ☆22Updated last month
• jiang-q19 / scPRAM
  scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism
  ☆17Updated last year
• Xinglab / IRIS
  IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening
  ☆27Updated last year
• kundajelab / ENCODE_scatac
  ☆11Updated 2 years ago
• KrishnaswamyLab / Gene-Signal-Pattern-Analysis
  Learning meaningful representations of genes
  ☆19Updated 4 months ago
• JialongJiang / DSPIN
  Code and example of the D-SPIN framework
  ☆24Updated last week
• matsengrp / sumrep
  Summary statistics for repertoires
  ☆17Updated 2 years ago
• Center-for-Health-Data-Science / multiDGD
  ☆26Updated 5 months ago
• hemberg-lab / VASAseq_2022
  This repository aims to serve as an index of the work described at Salmen & De Jonghe et. al 2022
  ☆24Updated 3 years ago
• jingshuw / SAVERX
  R package for transfer learning of single-cell RNA-seq denoising
  ☆30Updated 3 years ago