Alternatives and similar repositories for scAdapt:

Users that are interested in scAdapt are comparing it to the libraries listed below

• AprilYuge / ResPAN
  a light structured Residual autoencoder and mutual nearest neighbor Paring guided Adversarial Network for scRNA-seq batch correction
  ☆14Updated last year
• zhouzilu / cTPnet
  cTPnet Package
  ☆25Updated 2 years ago
• bm2-lab / scLearn
  scLearn：Learning for single cell assignment
  ☆35Updated 4 months ago
• lanagarmire / Single-cell-drug-repositioning
  ☆16Updated 9 months ago
• txWang / BERMUDA
  BERMUDA (Batch Effect ReMoval Using Deep Autoencoders) is a novel transfer-learning-based method for batch correction in scRNA-seq data.
  ☆30Updated 5 years ago
• Carldeboer / CisRegModels
  Scripts for building computational models of gene regulation with tensorflow
  ☆10Updated 5 years ago
• jingshuw / SAVERX
  R package for transfer learning of single-cell RNA-seq denoising
  ☆30Updated 2 years ago
• jiang-q19 / scPRAM
  scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism
  ☆13Updated 6 months ago
• lab-conrad / resVAE
  resVAE is a restricted latent variational autoencoder that we wrote to uncover hidden structures in gene expression data, especially usin…
  ☆12Updated 2 years ago
• FunctionLab / sei-manuscript
  Code for reproducing the Sei manuscript results
  ☆16Updated 3 years ago
• hemberg-lab / sc3s
  Single Cell Consensus Clustering with Speed
  ☆21Updated 2 years ago
• KrishnaswamyLab / Gene-Signal-Pattern-Analysis
  Learning meaningful representations of genes
  ☆17Updated 6 months ago
• Teddy-XiongGZ / DeepGSEA
  ☆16Updated 9 months ago
• DongqingSun96 / TISCH
  Tumor Immune Single-cell Hub
  ☆21Updated 4 years ago
• Roy-lab / scMTNI
  ☆25Updated 3 months ago
• shmohammadi86 / SCINET
  ☆18Updated 3 years ago
• CamaraLab / TDA-TCGA
  R package for the identification of cancer-associated mutated genes using gene expression and mutation data.
  ☆10Updated 3 years ago
• getzlab / CPTAC_PanCan_PTM_2023
  ☆16Updated last year
• OSU-BMBL / scDEAL
  Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data
  ☆54Updated 9 months ago
• JialongJiang / DSPIN
  Code and example of the D-SPIN framework
  ☆21Updated this week
• Teichlab / celltypist_wiki
  Materials and scripts for building cell type encyclopedia table
  ☆19Updated 3 months ago
• mingjingsi / FIRM
  Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasets
  ☆12Updated 2 years ago
• PMBio / scNMT-seq
  single-cell Nucleosome Methylation Transcription
  ☆13Updated 7 years ago
• cailab-tamu / scTenifoldNet
  A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data
  ☆23Updated 3 months ago
• raphael-group / netNMF-sc
  netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data
  ☆22Updated 4 years ago
• saezlab / FootprintMethods_on_scRNAseq
  Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data
  ☆26Updated 5 years ago
• QuKunLab / MultiomeBenchmarking
  ☆43Updated last month
• decomverse / ACTIONet
  ACTIONet single-cell analysis framework
  ☆38Updated 7 months ago
• QSong-github / scGCN
  scGCN is a graph convolutional networks algorithm for knowledge transfer in single cell omics
  ☆40Updated 2 years ago
• yuanzhiyuan / SODB_analysis
  ☆12Updated 2 years ago