AlphaFind: Discover structure similarity across the entire known proteome
☆24Nov 5, 2025Updated 3 months ago
Alternatives and similar repositories for AlphaFind
Users that are interested in AlphaFind are comparing it to the libraries listed below
Sorting:
- Protein Structure Archiver☆14Sep 10, 2025Updated 5 months ago
- Clusters protein chains based on CA distance difference☆16Feb 4, 2025Updated last year
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆17Dec 8, 2024Updated last year
- This repository contains the installation zip file, user manual, example data, and source code for the PyXlinkViewer plugin for PyMOL v2☆10Jul 3, 2023Updated 2 years ago
- ☆22Nov 26, 2025Updated 3 months ago
- Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening☆40Sep 27, 2024Updated last year
- Python interface for the RCSB search API.☆20Mar 20, 2024Updated last year
- DockCADD An automated computational framework for molecular docking☆15Mar 9, 2025Updated 11 months ago
- Explicit crosslinks in AlphaFold 3☆23Mar 17, 2025Updated 11 months ago
- 2D portraits of 3D protein structures☆27Sep 30, 2025Updated 5 months ago
- Estimate PTM hotspots in protein sequence alignments☆14Feb 6, 2019Updated 7 years ago
- Cloud-based molecular docking for everyone☆12Jul 1, 2024Updated last year
- Datamonkey - Run state-of-the-art statistical models through the comfort of your browser☆10Feb 23, 2026Updated last week
- PREVENT: PRotein Engineering by Variational frEe eNergy approximaTion☆13Jul 4, 2024Updated last year
- ☆13Dec 5, 2024Updated last year
- Spatiotemporal identification of druggable binding sites using deep learning☆22Mar 16, 2021Updated 4 years ago
- A generic mechanism for describing views used in molecular visualizations☆62Feb 8, 2026Updated 3 weeks ago
- some tools for working with protein (PDB) files in tensorflow☆11Jul 9, 2019Updated 6 years ago
- a pipeline for running MD simulations in the presence of probe molecules for druggability assessment☆12Dec 10, 2025Updated 2 months ago
- Demos of many Rosetta applications☆22Jun 10, 2025Updated 8 months ago
- ☆15Aug 13, 2023Updated 2 years ago
- Protein common interface databases☆10Apr 13, 2019Updated 6 years ago
- Semantic Segmentor for Protein Structures.☆11Dec 20, 2021Updated 4 years ago
- These are the famous Uppsala Software Factory programs, rescued into GitHub.☆10Nov 3, 2022Updated 3 years ago
- ☆13Mar 22, 2022Updated 3 years ago
- ☆28Oct 15, 2024Updated last year
- Molstar PDBe implementation☆132Feb 5, 2026Updated 3 weeks ago
- ☆16Oct 3, 2023Updated 2 years ago
- Advanced steps of the OSCA book☆14Nov 19, 2025Updated 3 months ago
- A command line tool for rapid visualisation of AlphaFold2 and AlphaFold3 predictions.☆14Oct 21, 2025Updated 4 months ago
- ☆13Feb 23, 2024Updated 2 years ago
- Initial recommendations for performing, benchmarking, and reporting single-cell proteomics experiments. The code is distributed under an …☆12Apr 5, 2023Updated 2 years ago
- Python package for handling ModelCIF mmCIF and BinaryCIF files☆13Feb 12, 2026Updated 2 weeks ago
- Modelling protein conformational landscape with Alphafold☆55Aug 29, 2025Updated 6 months ago
- SINCERITIES is a tool for inferring gene regulatory networks from time-stamped cross-sectional single cell transcriptional expression pro…☆14Oct 16, 2017Updated 8 years ago
- ☆13Sep 8, 2021Updated 4 years ago
- ☆14Sep 1, 2022Updated 3 years ago
- Analysis notebooks for "SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes".☆14Nov 20, 2020Updated 5 years ago
- ☆15Sep 5, 2025Updated 5 months ago