proteinevolution / Toolkit

Related projects ⓘ

Alternatives and complementary repositories for Toolkit

• soedinglab / MMseqs2-App
  MMseqs2 app to run on your workstation or servers
  ☆63Updated this week
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆61Updated 7 years ago
• rcsb / rcsb-saguaro
  1D Feature Viewer
  ☆42Updated last month
• SBRG / ssbio
  A Python framework for structural systems biology
  ☆104Updated 3 years ago
• ELELAB / mutatex
  scripts and facilities for in-silico mutagenesis with FoldX
  ☆51Updated this week
• prehensilecode / alphafold_singularity
  Singularity recipe for AlphaFold
  ☆33Updated last week
• psipred / psipred
  PSIPRED Protein Secondary Structure Predictor
  ☆51Updated this week
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆48Updated 3 months ago
• dosorio / Peptides
  An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.
  ☆80Updated 9 months ago
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆65Updated last week
• brineylab / abstar
  VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.
  ☆41Updated last week
• ViennaRNA / forgi
  An RNA manipulation library.
  ☆53Updated 9 months ago
• protwis / gpcrdb_data
  This repository is the collection point of reference data for the GPCRdb. The GPCRdb contains reference data, interactive visualisation a…
  ☆32Updated this week
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆78Updated 8 months ago
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆92Updated 2 months ago
• PDB-REDO / alphafill
  AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…
  ☆92Updated this week
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆85Updated 2 months ago
• MPI-Dortmund / pymissense
  PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.
  ☆22Updated last year
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆83Updated last year
• cbalbin-bio / pymol-color-alphafold
  PyMOL extension to color AlphaFold structures by confidence (pLDDT).
  ☆73Updated 3 months ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆83Updated 9 months ago
• BernhoferM / TMbed
  Transmembrane proteins predicted through Language Model embeddings
  ☆30Updated 8 months ago
• realbigws / RaptorX_Property_Fast
  RaptorX-Property: a Standalone Package for Protein Structure Property Prediction
  ☆15Updated 5 years ago
• kuixu / alphafold
  Install alphafold on the local machine, get out of docker.
  ☆100Updated 3 years ago
• mattarnoldbio / alphapickle
  ☆30Updated 8 months ago
• KIT-MBS / pydca
  Direct coupling analysis software for protein and RNA sequences
  ☆47Updated last year
• labstructbioinf / DeepCoil
  Fast and accurate prediction of coiled coil domains in protein sequences. ​
  ☆22Updated 11 months ago
• althonos / peptides.py
  Physicochemical properties, indices and descriptors for amino-acid sequences.
  ☆72Updated 2 months ago
• PDBeurope / pdbe-api-training
  Interactive Python notebooks for PDBe API training
  ☆45Updated last week
• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆69Updated 2 weeks ago