proteinevolution / ToolkitLinks
The MPI Bioinformatics Toolkit
☆66Updated this week
Alternatives and similar repositories for Toolkit
Users that are interested in Toolkit are comparing it to the libraries listed below
Sorting:
- Evolutionary conservation estimation of residues or nucleotides☆44Updated 3 years ago
- Singularity recipe for AlphaFold☆36Updated 7 months ago
- scripts and facilities for in-silico mutagenesis with FoldX☆57Updated 6 months ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆73Updated 2 weeks ago
- PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.☆23Updated last year
- Automatic oligonucleotide design for PCR-based gene synthesis☆46Updated 5 years ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆54Updated 2 months ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆88Updated last year
- Evolutionary velocity with protein language models☆93Updated last year
- a pipeline to build similarity maps of protein space☆35Updated 6 months ago
- A domain parser for Alphafold models☆38Updated last year
- A multiple sequence alignment viewer☆23Updated 2 weeks ago
- Transmembrane proteins predicted through Language Model embeddings☆37Updated last month
- Comprehensive Python client for the Uniprot REST API☆50Updated last week
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆112Updated 9 months ago
- ☆36Updated this week
- A Python package for mapping sequence aligned data onto protein structures☆35Updated 4 years ago
- MMseqs2 app to run on your workstation or servers☆84Updated last week
- Fast protein structure searching or your money back☆103Updated 2 months ago
- Python framework for doing ancestral sequence reconstruction☆38Updated 11 months ago
- AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…☆101Updated last month
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆42Updated 3 weeks ago
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆133Updated 6 months ago
- An RNA manipulation library.☆56Updated last year
- Mutation effects predicted from sequence co-variation☆66Updated 7 years ago
- PSIPRED Protein Secondary Structure Predictor☆57Updated 7 months ago
- Python package and command line tool for epitope prediction☆51Updated 10 months ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆29Updated last year
- Fast and accurate prediction of coiled coil domains in protein sequences. ☆24Updated last year
- Interactive Python notebooks for PDBe API training☆55Updated last week