proteinevolution / Toolkit
The MPI Bioinformatics Toolkit
☆62Updated last week
Related projects: ⓘ
- Fast and accurate prediction of coiled coil domains in protein sequences. ☆21Updated 9 months ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆46Updated last month
- Evolutionary velocity with protein language models☆83Updated 11 months ago
- Singularity recipe for AlphaFold☆32Updated last year
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆40Updated 2 weeks ago
- Transmembrane proteins predicted through Language Model embeddings☆26Updated 6 months ago
- scripts and facilities for in-silico mutagenesis with FoldX☆49Updated last month
- MMseqs2 app to run on your workstation or servers☆55Updated this week
- Comprehensive Python client for the Uniprot REST API☆43Updated last month
- Evolutionary conservation estimation of residues or nucleotides☆32Updated 2 years ago
- Mutation effects predicted from sequence co-variation☆59Updated 7 years ago
- An RNA manipulation library.☆51Updated 7 months ago
- Python package and command line tool for epitope prediction☆48Updated last month
- Physicochemical properties, indices and descriptors for amino-acid sequences.☆67Updated last week
- Interactive Python notebooks for PDBe API training☆44Updated 3 months ago
- Conservation analysis of homologous proteins with Python☆9Updated 3 years ago
- Direct coupling analysis software for protein and RNA sequences☆45Updated last year
- An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.☆79Updated 7 months ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆59Updated last week
- PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.☆22Updated 11 months ago
- Centroid RNA package☆19Updated 3 years ago
- AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…☆90Updated 4 months ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆56Updated 3 years ago
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆48Updated 2 months ago
- Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.☆51Updated last year
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- retrieve protein sequence identifiers and metadata from http://uniprot.org☆67Updated 2 years ago
- A Python package for mapping sequence aligned data onto protein structures☆34Updated 3 years ago