proteinevolution / Toolkit
The MPI Bioinformatics Toolkit
☆65Updated 2 weeks ago
Alternatives and similar repositories for Toolkit:
Users that are interested in Toolkit are comparing it to the libraries listed below
- MMseqs2 app to run on your workstation or servers☆76Updated this week
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆72Updated 3 weeks ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆53Updated 2 weeks ago
- Singularity recipe for AlphaFold☆35Updated 5 months ago
- Evolutionary conservation estimation of residues or nucleotides☆39Updated 3 years ago
- Evolutionary velocity with protein language models☆90Updated last year
- An RNA manipulation library.☆54Updated last year
- Mutation effects predicted from sequence co-variation☆64Updated 7 years ago
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆42Updated last week
- DSSPparser is an easy tool to parse dssp file, and can transform PDB format file to dssp format file by xssp,also support the tansfrom be…☆13Updated 2 years ago
- PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.☆23Updated last year
- A Python package for mapping sequence aligned data onto protein structures☆35Updated 3 years ago
- Automatic oligonucleotide design for PCR-based gene synthesis☆44Updated 5 years ago
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆67Updated 3 years ago
- Transmembrane proteins predicted through Language Model embeddings☆35Updated 2 months ago
- PSIPRED Protein Secondary Structure Predictor☆54Updated 5 months ago
- Fast and accurate prediction of coiled coil domains in protein sequences. ☆24Updated last year
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆83Updated last year
- teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, …☆41Updated 2 months ago
- Comprehensive Python client for the Uniprot REST API☆48Updated 8 months ago
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆103Updated 7 months ago
- Protein 3D structure prediction pipeline☆79Updated last week
- Python package and command line tool for epitope prediction☆51Updated 8 months ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆58Updated 4 years ago
- Fast protein structure searching or your money back☆102Updated 2 weeks ago
- A Python framework for structural systems biology☆107Updated 4 years ago
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆33Updated 2 years ago
- scripts and facilities for in-silico mutagenesis with FoldX☆56Updated 4 months ago
- Template-based RNA secondary structure visualization☆26Updated 5 months ago
- snakemake pipeline for creating trees from sequence sets☆76Updated last month