Alternatives and similar repositories for Toolkit

Users that are interested in Toolkit are comparing it to the libraries listed below

• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆54Updated last month
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆84Updated last year
• soedinglab / MMseqs2-App
  MMseqs2 app to run on your workstation or servers
  ☆78Updated 2 weeks ago
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆42Updated 3 years ago
• pymodproject / pymod
  PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.
  ☆79Updated 2 months ago
• psipred / psipred
  PSIPRED Protein Secondary Structure Predictor
  ☆54Updated 5 months ago
• KIT-MBS / pydca
  Direct coupling analysis software for protein and RNA sequences
  ☆50Updated last year
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆90Updated last year
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆72Updated last week
• ELELAB / mutatex
  scripts and facilities for in-silico mutagenesis with FoldX
  ☆56Updated 5 months ago
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆65Updated 7 years ago
• fhalab / evSeq
  Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
  ☆34Updated 2 years ago
• brineylab / abstar
  VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.
  ☆42Updated last month
• rcsb / rcsb-saguaro
  1D Feature Viewer
  ☆48Updated this week
• labstructbioinf / DeepCoil
  Fast and accurate prediction of coiled coil domains in protein sequences. ​
  ☆24Updated last year
• Lattice-Automation / primers
  A PCR primer tool for DNA assembly flows
  ☆32Updated last year
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆58Updated 4 years ago
• davidhoover / DNAWorks
  Automatic oligonucleotide design for PCR-based gene synthesis
  ☆44Updated 5 years ago
• prehensilecode / alphafold_singularity
  Singularity recipe for AlphaFold
  ☆36Updated 6 months ago
• psipred / DMPfold2
  Fast and accurate protein structure prediction
  ☆52Updated 3 months ago
• greener-group / progres
  Fast protein structure searching or your money back
  ☆102Updated last month
• kuixu / alphafold
  Install alphafold on the local machine, get out of docker.
  ☆101Updated 3 years ago
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆36Updated last year
• boscoh / uniprot
  retrieve protein sequence identifiers and metadata from http://uniprot.org
  ☆67Updated 3 years ago
• ViennaRNA / forgi
  An RNA manipulation library.
  ☆56Updated last year
• PDBeurope / pdbe-api-training
  Interactive Python notebooks for PDBe API training
  ☆52Updated last week
• BernhoferM / TMbed
  Transmembrane proteins predicted through Language Model embeddings
  ☆35Updated 3 months ago
• PDB-REDO / alphafill
  AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…
  ☆100Updated last week
• cbalbin-bio / pymol-color-alphafold
  PyMOL extension to color AlphaFold structures by confidence (pLDDT).
  ☆94Updated 9 months ago
• haddocking / haddock-tools
  Set of useful HADDOCK utility scripts
  ☆51Updated 8 months ago