Alternatives and similar repositories for CLoNe

Users that are interested in CLoNe are comparing it to the libraries listed below

• Zuttergutao / GMXAnalysis
  For the purpose of post progressing of MD carried by gromacs
  ☆22Updated 3 months ago
• DLab / RIP-MD
  ☆15Updated 7 years ago
• GodzikLab / FATCAT-dist
  ☆15Updated 2 years ago
• mungpeter / RAMAplot
  Generate Ramachandran plots for single PDB structure and as heatmap for MD trajectory
  ☆9Updated 3 years ago
• NRGlab / Surfaces
  ☆14Updated 4 months ago
• PhilippJunk / homelette
  A unified and modular interface to homology modelling software
  ☆11Updated last year
• Faezov / PDBrenum
  ☆30Updated last month
• KULL-Centre / _2022_functional-sites-cagiada
  ☆22Updated last year
• kamerlinlab / KIN
  Repo for the publication titled: "Key Interaction Networks: Identifying Evolutionarily Conserved Non-Covalent Interaction Networks Across…
  ☆17Updated last year
• genki-kudo / Pocket-to-Concavity
  Pocket to Concavity is a tool for refinement of Protein-Ligand binding site shape from alpha-spheres
  ☆16Updated 8 months ago
• CBIIT / KDS
  KDS software for Kinase Drug Selectivity
  ☆11Updated 2 years ago
• Wang-Lin-boop / PPI-Miner
  A Motif-Based PPI Searching Pipeline for PPI Mining and Protein Design
  ☆19Updated 4 months ago
• tommyhuangthu / SSIPe
  EvoEF + evolutionary profile for ddG_bind prediction
  ☆14Updated 2 years ago
• Jnelen / DiffDockHPC
  DiffDock implementation that adds support for HPC execution using Slurm and Singularity
  ☆26Updated last month
• delemottelab / allosteric-pathways
  Building and analyzing residue interaction networks with cofactors (includes tutorial).
  ☆17Updated 4 years ago
• 3BioCompBio / pyScoMotif
  Python tool for the discovery of similar 3D structural motifs across protein structures.
  ☆27Updated last year
• pepamengual / UEP
  ☆9Updated 2 years ago
• haddocking / prodigy-lig
  Prediction of Protein-Small molecule binding affinities
  ☆17Updated 8 months ago
• agrybauskas / rotag
  A collection of tools that generate and analyse side-chain rotamer libraries
  ☆10Updated this week
• biomed-AI / GPSite
  Geometry-aware protein binding site predictor
  ☆21Updated 9 months ago
• gersteinlab / STRESS
  ☆8Updated 6 years ago
• ELELAB / pyinteraph2
  development repository for PyInteraph2
  ☆22Updated 3 months ago
• liedllab / surface_analyses
  Scores for Hydrophobicity and Charges based on SASAs
  ☆31Updated 2 weeks ago
• KeatingLab / PixelDB
  ☆13Updated 7 years ago
• swanss / peptide_design
  This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"
  ☆17Updated last year
• michal-brylinski / efindsite
  Ligand binding site prediction and virtual screening
  ☆12Updated 6 years ago
• quantaosun / FEP-Minus
  Academic license pre-required. While FEP Plus charge you 100,000 USD per year. Here comes the FEP-Minus, it is a Schrodinger FEP Plus ide…
  ☆21Updated 10 months ago
• dkoes / show_contacts
  PyMOL Plugin for displaying polar contacts
  ☆17Updated 6 years ago
• iwatobipen / vs_vina
  ☆14Updated 3 years ago
• ohuelab / MEGADOCK-on-Colab
  MEGADOCK on Google Colaboratory
  ☆17Updated last year