Clustering tool for biomolecular structural ensembles and data in general.
☆10Aug 24, 2020Updated 6 years ago
Alternatives and similar repositories for CLoNe
Users that are interested in CLoNe are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool for the analysis of pathways sampled in molecular dynamics simulations based on Self-Organizing Maps (SOM)☆10Jan 26, 2022Updated 4 years ago
- ☆14Jun 4, 2024Updated 2 years ago
- Coarse grain to atomistic molecular coordinate and topology converter☆16Mar 13, 2025Updated last year
- Copernicus☆18Oct 27, 2017Updated 9 years ago
- ☆10Aug 28, 2024Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Python program, based on Prody, for pathogenicity prediction of human missense variants☆10Jun 29, 2021Updated 5 years ago
- Code and demos corresponding to our paper:"Accurate Pocket Identification for Binding-Site-Agnostic Docking", https://arxiv.org/abs/2502.…☆11Apr 24, 2026Updated 6 months ago
- ☆13Oct 5, 2026Updated 3 weeks ago
- ☆14Aug 29, 2024Updated 2 years ago
- Martini 3 Building Blocks for Lipid Nanoparticle Design☆28Mar 18, 2026Updated 7 months ago
- Multi-Level DBSCAN: A Hierarchical Density-Based Clustering Method for Analyzing Molecular Dynamics Trajectories☆13Dec 6, 2020Updated 5 years ago
- A single-cell RNAseq differential expression analysis approach in case-control study☆10Mar 6, 2022Updated 4 years ago
- MDverse web scrapper 🔎🔧📄☆15Feb 21, 2026Updated 8 months ago
- ☆10Feb 14, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- mosaicMPI: mosaic multi-resolution program integration☆12Jul 9, 2026Updated 3 months ago
- A versatile and interactive package for solving crystal structures from powder diffraction data☆14Oct 2, 2026Updated last month
- PPI Affinity Prediction☆12Nov 15, 2025Updated 11 months ago
- ☆25Feb 28, 2023Updated 3 years ago
- ☆10Apr 12, 2023Updated 3 years ago
- MM/PBSA binding free energy calculation☆22May 31, 2024Updated 2 years ago
- A simplified drug discovery pipeline -- generating SMILE molecular with AlphaSMILES, predicting protein structure with AlphaFold, and che…☆18Aug 13, 2021Updated 5 years ago
- Random Acceleration Molecular Dynamics in GROMACS☆46Sep 7, 2026Updated last month
- SubPEx (Sub-Pocket Explorer) is a tool to enhance ensemble (multiple-receptor/relaxed-complex) virtual screening. It uses weighted ensemb…☆18Jun 30, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- GLEE: Geometric Laplacian Eigenmap Embedding☆12Mar 7, 2020Updated 6 years ago
- a package to simulate fluid surfaces and biomembranes☆42Sep 27, 2026Updated last month
- ☆10Jun 5, 2021Updated 5 years ago
- Some GROMACS tutorials using methane and water☆17Dec 7, 2016Updated 9 years ago
- Non-negative Independent Factor Analysis for single cell RNA-seq☆12Feb 25, 2022Updated 4 years ago
- Based off of the official Rostlab & PredictProtein website installation, as of 2020-09-07, the produced Docker image from this repository…☆15Feb 13, 2023Updated 3 years ago
- CAPSIF2 and PiCAP☆15May 29, 2026Updated 5 months ago
- De novo design of small molecule binding sites into proteins☆11Apr 14, 2021Updated 5 years ago
- https://grasp.ufv.br/☆17Jul 6, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Tool suite for analysing molecular dynamics trajectories using network analysis and PRS☆55May 30, 2025Updated last year
- A software research tool for the analysis of structural communication in protein ensembles☆15Mar 24, 2022Updated 4 years ago
- ☆23Dec 11, 2024Updated last year
- Web application for protein-ligand binding sites analysis and visualization☆16Jan 9, 2023Updated 3 years ago
- Denoising diffusion probabilistic models for replica exchange☆23Feb 19, 2022Updated 4 years ago
- ☆23Mar 6, 2024Updated 2 years ago
- PAgeRAnk-flux on Graphlet-guided network for multi-Omic data integratioN - Network Inference☆11Nov 12, 2024Updated last year