Clustering tool for biomolecular structural ensembles and data in general.
☆10Aug 24, 2020Updated 5 years ago
Alternatives and similar repositories for CLoNe
Users that are interested in CLoNe are comparing it to the libraries listed below
Sorting:
- GLEE: Geometric Laplacian Eigenmap Embedding☆11Mar 7, 2020Updated 5 years ago
- ☆10Jun 5, 2021Updated 4 years ago
- A single-cell RNAseq differential expression analysis approach in case-control study☆10Mar 6, 2022Updated 3 years ago
- ☆10Feb 14, 2022Updated 4 years ago
- A tool for the analysis of pathways sampled in molecular dynamics simulations based on Self-Organizing Maps (SOM)☆10Jan 26, 2022Updated 4 years ago
- mosaicMPI: mosaic multi-resolution program integration☆12Dec 9, 2025Updated 2 months ago
- Based off of the official Rostlab & PredictProtein website installation, as of 2020-09-07, the produced Docker image from this repository…☆14Feb 13, 2023Updated 3 years ago
- PAgeRAnk-flux on Graphlet-guided network for multi-Omic data integratioN - Network Inference☆11Nov 12, 2024Updated last year
- Non-negative Independent Factor Analysis for single cell RNA-seq☆11Feb 25, 2022Updated 4 years ago
- A software research tool for the analysis of structural communication in protein ensembles☆14Mar 24, 2022Updated 3 years ago
- An automated workflow to create disease-specific Knowledge Graphs☆19Aug 21, 2025Updated 6 months ago
- ☆14Jun 4, 2024Updated last year
- Multi-Level DBSCAN: A Hierarchical Density-Based Clustering Method for Analyzing Molecular Dynamics Trajectories☆13Dec 6, 2020Updated 5 years ago
- https://grasp.ufv.br/☆15Jul 6, 2023Updated 2 years ago
- Protein Structure Archiver☆14Sep 10, 2025Updated 5 months ago
- De novo design of small molecule binding sites into proteins☆12Apr 14, 2021Updated 4 years ago
- ☆19Oct 4, 2022Updated 3 years ago
- MDverse web scrapper 🔎🔧📄☆15Feb 21, 2026Updated last week
- Pocket to Concavity is a tool for refinement of Protein-Ligand binding site shape from alpha-spheres☆16Oct 2, 2024Updated last year
- ☆19Dec 1, 2021Updated 4 years ago
- Some GROMACS tutorials using methane and water☆15Dec 7, 2016Updated 9 years ago
- generating various molecular representations for chemicals, proteins, DNAs/RNAs and their interactions.☆16Oct 19, 2019Updated 6 years ago
- [Bioinformatics 2022] Cross-Modality and Self-Supervised Protein Embedding for Compound-Protein Affinity and Contact Prediction☆16Jun 6, 2024Updated last year
- Web application for protein-ligand binding sites analysis and visualization☆16Jan 9, 2023Updated 3 years ago
- ☆19Feb 25, 2025Updated last year
- Network annotation visualization☆18May 21, 2025Updated 9 months ago
- MSMD (mixed-solvent molecular dynamics) engine and analysis tools☆19Updated this week
- A simplified drug discovery pipeline -- generating SMILE molecular with AlphaSMILES, predicting protein structure with AlphaFold, and che…☆18Aug 13, 2021Updated 4 years ago
- A Motif-Based PPI Searching Pipeline for PPI Mining and Protein Design☆21Feb 11, 2025Updated last year
- development repository for PyInteraph2☆22Mar 26, 2025Updated 11 months ago
- Visualize sequence and multiple sequence alignment (MSA)☆15May 30, 2022Updated 3 years ago
- Copernicus☆18Oct 27, 2017Updated 8 years ago
- Code for WACV 2022 paper "Generalized Clustering and Multi-Manifold Learning with Geometric Structure Preservation"☆20Dec 16, 2022Updated 3 years ago
- Generate A3M and TGT file from a given sequence in FASTA format.☆11Nov 16, 2020Updated 5 years ago
- This package is meant to calculate the dihedral entropy of a biomolecule. However, it can also calculate the entropy of any binnable dat…☆23Feb 2, 2024Updated 2 years ago
- Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods☆23Feb 24, 2025Updated last year
- MM/PBSA binding free energy calculation☆22May 31, 2024Updated last year
- ☆29Sep 4, 2023Updated 2 years ago
- ☆21Dec 11, 2024Updated last year