Alternatives and similar repositories for MusiteDeep_web

Users that are interested in MusiteDeep_web are comparing it to the libraries listed below

• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆60Updated 4 years ago
• csi-greifflab / manuscript_insilico_antibody_generation
  ☆23Updated 4 years ago
• xinyu-dev / annotate_v
  Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python
  ☆30Updated 2 years ago
• GreiffLab / manuscript_ab_epitope_interaction
  ☆25Updated 2 years ago
• Rostlab / bindPredict
  Prediction of binding residues for metal ions, nucleic acids, and small molecules.
  ☆34Updated 4 months ago
• dohlee / antiberty-pytorch
  An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.
  ☆26Updated last year
• ranganathanlab / bmDCA
  Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).
  ☆35Updated 5 years ago
• piercelab / tcrmodel2
  ☆45Updated 9 months ago
• alexarnimueller / modlAMP
  Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.
  ☆60Updated 10 months ago
• sameerkhurana10 / DSOL_rv0.2
  deep protein solubility prediction
  ☆40Updated 6 years ago
• aqlaboratory / hsm
  Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."
  ☆71Updated last year
• AIforGreatGood / biotransfer
  Machine learning-driven antibody design
  ☆63Updated 2 years ago
• Doudna-lab / GARNET_DL
  ☆36Updated last year
• SNU-CSSB / RF2-Lite
  ☆32Updated last year
• brennanaba / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆58Updated last year
• ivanjayapurna / low-n-protein-engineering
  A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented …
  ☆27Updated 5 years ago
• biomed-AI / GPSite
  Geometry-aware protein binding site predictor
  ☆25Updated last year
• Wang-lab-UCSD / RESP
  The code used to generate the results from Parkinson / Hard et al. 2022
  ☆17Updated 6 months ago
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆90Updated last year
• gv20-therapeutics / antibody-in-pytorch
  Machine learning models for antibody sequences in PyTorch
  ☆41Updated 4 years ago
• DeepRank / DeepRank-GNN-esm
  Graph Network for protein-protein interface including language model features
  ☆34Updated last year
• Faezov / PDBrenum
  ☆30Updated 8 months ago
• jas-preet / SPOT-1D-Single
  The standalone version of SPOT-1D-Single available for public use for research purposes.
  ☆24Updated last year
• jlparkI / AntPack
  Tools for annotation, processing and ML for antibody sequences
  ☆37Updated this week
• oxpig / p-IgGen
  p-IgGen: A Generative Paired Antibody Language Model
  ☆13Updated 8 months ago
• oxpig / AbLang2
  An antibody-specific language model focusing on NGL prediction
  ☆34Updated last year
• gitter-lab / nn4dms
  Neural networks for deep mutational scanning data
  ☆71Updated 7 months ago
• csi-greifflab / developability_profiling
  ☆27Updated 4 months ago
• Andre-lab / evodock
  A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking
  ☆29Updated 6 months ago
• AbSciBio / igdesign
  ☆47Updated last year