Alternatives and similar repositories for MusiteDeep_web

Users that are interested in MusiteDeep_web are comparing it to the libraries listed below

• GreiffLab / manuscript_ab_epitope_interaction
  ☆25Updated last year
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆54Updated 2 months ago
• brennanaba / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆49Updated 6 months ago
• csi-greifflab / manuscript_insilico_antibody_generation
  ☆24Updated 3 years ago
• csi-greifflab / developability_profiling
  ☆21Updated 5 months ago
• Doudna-lab / GARNET_DL
  ☆37Updated 4 months ago
• xinyu-dev / annotate_v
  Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python
  ☆30Updated last year
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆58Updated 4 years ago
• KIT-MBS / pydca
  Direct coupling analysis software for protein and RNA sequences
  ☆50Updated 3 weeks ago
• SNU-CSSB / RF2-Lite
  ☆30Updated last year
• Furman-Lab / Peptide_docking_with_AF2_and_RosettAfold
  Code and data used in https://doi.org/10.1101/2021.08.01.454656
  ☆53Updated 3 years ago
• piercelab / tcrmodel2
  ☆41Updated 2 months ago
• gv20-therapeutics / antibody-in-pytorch
  Machine learning models for antibody sequences in PyTorch
  ☆39Updated 4 years ago
• ElwynWang / DeepFragLib
  ☆29Updated 4 years ago
• swanss / peptide_design
  This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"
  ☆17Updated last year
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆88Updated last year
• minmarg / gtalign_alpha
  GTalign, HPC protein structure alignment, superposition and search (alpha release)
  ☆45Updated 4 months ago
• dohlee / antiberty-pytorch
  An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.
  ☆24Updated last year
• Lailabcode / DeepSCM
  A convolutional neural network model to predict spatial charge map (SCM) score, a molecular dynamics simulation-based model to predict an…
  ☆26Updated 2 years ago
• alexarnimueller / modlAMP
  Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.
  ☆60Updated 2 months ago
• psp3dcg / LightRoseTTA
  The official pytorch implementation of "LightRoseTTA: High-efficient and Accurate Protein Structure Prediction Using an Ultra-Lightweight…
  ☆16Updated last month
• AIforGreatGood / biotransfer
  Machine learning-driven antibody design
  ☆56Updated last year
• pylelab / rMSA
  RNA Multiple Sequence Alignment
  ☆41Updated last year
• Wang-lab-UCSD / RESP
  The code used to generate the results from Parkinson / Hard et al. 2022
  ☆17Updated last month
• AbSciBio / igdesign
  ☆40Updated 4 months ago
• jas-preet / SPOT-1D-Single
  The standalone version of SPOT-1D-Single available for public use for research purposes.
  ☆23Updated last year
• jlparkI / AntPack
  Tools for annotation, processing and ML for antibody sequences
  ☆29Updated last week
• beckham-lab / EpHod
  Machine learning prediction of enzyme optimum pH
  ☆41Updated last month
• GIST-CSBL / HoTS
  HoTS: Sequence-based prediction of binding regions and drug-target interactions.
  ☆26Updated 2 years ago
• DeepRank / DeepRank-GNN-esm
  Graph Network for protein-protein interface including language model features
  ☆32Updated last year