shubhamchandak94 / SpringLinks
FASTQ compression
☆129Updated last year
Alternatives and similar repositories for Spring
Users that are interested in Spring are comparing it to the libraries listed below
Sorting:
- DRAGEN open-source mapper☆176Updated last year
- A fast lossless FASTQ compressor with ultra-high compression ratio☆138Updated 2 months ago
- A minimap2 frontend for PacBio native data formats☆202Updated 5 months ago
- BWA-MEME: Faster BWA-MEM2 using learned-index☆123Updated last year
- A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster to…☆168Updated 4 months ago
- Structural variation and indel detection by local assembly☆247Updated last month
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆164Updated 11 months ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆155Updated 5 months ago
- A complete diploid human genome☆123Updated last week
- SV detection from paired end reads mapping☆117Updated 6 years ago
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆194Updated last week
- ☆131Updated last week
- A tool for estimating repeat sizes☆195Updated last year
- A Tool for integrated Quality Control and Preprocessing on FASTQ or BAM/CRAM files☆109Updated last year
- ☆123Updated last week
- A structural variation pipeline for short-read sequencing☆191Updated this week
- An efficient FASTQ manipulation suite☆138Updated 5 years ago
- Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants …☆172Updated 5 years ago
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data☆137Updated last month
- ABRA2☆92Updated 2 years ago
- Whole Genome Simulator for Next-Generation Sequencing☆99Updated 8 months ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- ☆99Updated last week
- Tool for stripping adaptors and/or merging paired reads with overlap into single reads.☆144Updated 8 years ago
- Jasmine: SV Merging Across Samples☆219Updated 7 months ago
- This repository contains information about latest release from Genome in a Bottle project☆74Updated 5 years ago
- Match up paired end fastq files quickly and efficiently.☆151Updated last year
- AdapterRemoval v2 - rapid adapter trimming, identification, and read merging☆113Updated 2 months ago
- Scalable gVCF merging and joint variant calling for population sequencing projects☆164Updated last year
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆225Updated 3 years ago