FASTQ compression
☆152Aug 15, 2023Updated 2 years ago
Alternatives and similar repositories for Spring
Users that are interested in Spring are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Compressor for Nanopore Sequencing Reads☆23Feb 10, 2023Updated 3 years ago
- Fastq compression☆19Oct 3, 2019Updated 6 years ago
- FaStore - high-performance FASTQ files compressor☆19May 19, 2022Updated 4 years ago
- A FASTQ lossless compression algorithm especially designed for nanopore sequencing FASTQ files.☆10Jul 2, 2020Updated 5 years ago
- Creating a simple Docker image to help perform comparisons for FASTQ compression☆42Mar 11, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A Lossy compressor for Quality Scores in Genomic Data☆12Oct 4, 2016Updated 9 years ago
- FQSqueezer - FASTQ compressor based on k-mer statistics☆18Feb 24, 2024Updated 2 years ago
- A fast lossless FASTQ compressor with ultra-high compression ratio☆152May 28, 2025Updated 11 months ago
- This is the GPress, a framework for querying GTF, GFF3 and expression files in a compressed form.☆11Oct 5, 2023Updated 2 years ago
- URMAP ultra-fast read mapper☆38Jun 15, 2020Updated 5 years ago
- Fastq compression tool☆17Dec 2, 2019Updated 6 years ago
- Concordance and contamination estimator for tumor–normal pairs☆60Oct 22, 2024Updated last year
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Oct 6, 2020Updated 5 years ago
- Deep learning-based structural variant filtering method☆40Nov 19, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- DSRC - DNA Sequence Reads Compressor☆60May 20, 2022Updated 4 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆37Oct 14, 2025Updated 7 months ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago
- A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster to…☆183May 13, 2026Updated last week
- BWA-MEME: Faster BWA-MEM2 using learned-index☆137Mar 25, 2026Updated last month
- A pipeline for the identification of Compound Heterozygous Variants☆10Nov 10, 2022Updated 3 years ago
- Compressing next-generation sequencing data with extreme prejudice.☆83May 31, 2022Updated 3 years ago
- The next version of bwa-mem☆834Oct 15, 2025Updated 7 months ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆235Feb 17, 2022Updated 4 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- VarDict☆203Jan 5, 2024Updated 2 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆144Aug 24, 2025Updated 9 months ago
- Compression☆18Jul 1, 2020Updated 5 years ago
- Assembled Genomes Compressor☆180May 6, 2026Updated 2 weeks ago
- hs-blastn, a fast and accurate nucleotide-nucleotide sequences aligner.☆27Aug 12, 2020Updated 5 years ago
- Gene fusion detection and visualization☆132Feb 21, 2022Updated 4 years ago
- fastq quality assessment and filtering tool☆17Dec 10, 2022Updated 3 years ago
- Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences☆64Aug 1, 2025Updated 9 months ago
- sort genomic data☆36Nov 7, 2025Updated 6 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Open Source MPEG-G Codec☆49Updated this week
- An experimental tool to estimate the similarity between all pairs of contigs☆40Apr 12, 2021Updated 5 years ago
- Snakemake pipeline for simulating shotgun metagenomic samples☆29Mar 13, 2026Updated 2 months ago
- Exploration of controlled loss of quality values for compressing CRAM files☆36Feb 23, 2023Updated 3 years ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Aug 17, 2022Updated 3 years ago
- ☆22Nov 21, 2016Updated 9 years ago
- BWA-MEM program accelerated with the GASAL2 library☆19Sep 2, 2019Updated 6 years ago