FASTQ compression
☆146Aug 15, 2023Updated 2 years ago
Alternatives and similar repositories for Spring
Users that are interested in Spring are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Compressor for Nanopore Sequencing Reads☆23Feb 10, 2023Updated 3 years ago
- Fastq compression☆19Oct 3, 2019Updated 6 years ago
- FaStore - high-performance FASTQ files compressor☆19May 19, 2022Updated 3 years ago
- A FASTQ lossless compression algorithm especially designed for nanopore sequencing FASTQ files.☆10Jul 2, 2020Updated 5 years ago
- Creating a simple Docker image to help perform comparisons for FASTQ compression☆41Mar 11, 2023Updated 3 years ago
- A Lossy compressor for Quality Scores in Genomic Data☆12Oct 4, 2016Updated 9 years ago
- FQSqueezer - FASTQ compressor based on k-mer statistics☆17Feb 24, 2024Updated 2 years ago
- A fast lossless FASTQ compressor with ultra-high compression ratio☆145May 28, 2025Updated 9 months ago
- This is the GPress, a framework for querying GTF, GFF3 and expression files in a compressed form.☆11Oct 5, 2023Updated 2 years ago
- Fastq compression tool☆17Dec 2, 2019Updated 6 years ago
- URMAP ultra-fast read mapper☆38Jun 15, 2020Updated 5 years ago
- Concordance and contamination estimator for tumor–normal pairs☆59Oct 22, 2024Updated last year
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Oct 6, 2020Updated 5 years ago
- Deep learning-based structural variant filtering method☆39Nov 19, 2023Updated 2 years ago
- DSRC - DNA Sequence Reads Compressor☆60May 20, 2022Updated 3 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆36Oct 14, 2025Updated 5 months ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago
- A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster to…☆175Mar 13, 2026Updated last week
- BWA-MEME: Faster BWA-MEM2 using learned-index☆133Jul 1, 2024Updated last year
- Compressing next-generation sequencing data with extreme prejudice.☆83May 31, 2022Updated 3 years ago
- The next version of bwa-mem☆824Oct 15, 2025Updated 5 months ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆234Feb 17, 2022Updated 4 years ago
- VarDict☆203Jan 5, 2024Updated 2 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆143Aug 24, 2025Updated 7 months ago
- Compression☆18Jul 1, 2020Updated 5 years ago
- Assembled Genomes Compressor☆178Nov 25, 2024Updated last year
- hs-blastn, a fast and accurate nucleotide-nucleotide sequences aligner.☆27Aug 12, 2020Updated 5 years ago
- Gene fusion detection and visualization☆133Feb 21, 2022Updated 4 years ago
- fastq quality assessment and filtering tool☆18Dec 10, 2022Updated 3 years ago
- SNV expectation maximisation based mutation calling algorithm aimed at detecting somatic mutations in paired (tumour/normal) cancer sampl…☆64Apr 24, 2025Updated 11 months ago
- Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences☆64Aug 1, 2025Updated 7 months ago
- Open Source MPEG-G Codec☆48Updated this week
- sort genomic data☆36Nov 7, 2025Updated 4 months ago
- An experimental tool to estimate the similarity between all pairs of contigs☆40Apr 12, 2021Updated 4 years ago
- Snakemake pipeline for simulating shotgun metagenomic samples☆29Mar 13, 2026Updated last week
- Exploration of controlled loss of quality values for compressing CRAM files☆36Feb 23, 2023Updated 3 years ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Aug 17, 2022Updated 3 years ago
- ☆22Nov 21, 2016Updated 9 years ago
- BWA-MEM program accelerated with the GASAL2 library☆19Sep 2, 2019Updated 6 years ago