shubhamchandak94 / SpringLinks
FASTQ compression
☆128Updated last year
Alternatives and similar repositories for Spring
Users that are interested in Spring are comparing it to the libraries listed below
Sorting:
- A fast lossless FASTQ compressor with ultra-high compression ratio☆139Updated last month
- ABRA2☆92Updated 2 years ago
- A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster to…☆168Updated 3 months ago
- DRAGEN open-source mapper☆176Updated last year
- pbsv - PacBio structural variant (SV) calling and analysis tools☆154Updated 4 months ago
- A complete diploid human genome☆121Updated 6 months ago
- An efficient FASTQ manipulation suite☆137Updated 5 years ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆224Updated 3 years ago
- Structural variation and indel detection by local assembly☆247Updated 2 weeks ago
- Tool for stripping adaptors and/or merging paired reads with overlap into single reads.☆143Updated 8 years ago
- Generate duplex/single consensus reads to reduce sequencing noises and remove duplications☆122Updated last year
- samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.☆232Updated 3 years ago
- Jasmine: SV Merging Across Samples☆217Updated 6 months ago
- BAM Statistics, Feature Counting and Annotation☆150Updated 3 weeks ago
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆194Updated last week
- using all the bits for echt rapid variant annotation and filtering☆153Updated 3 months ago
- AdapterRemoval v2 - rapid adapter trimming, identification, and read merging☆113Updated last month
- A minimap2 frontend for PacBio native data formats☆201Updated 4 months ago
- SV detection from paired end reads mapping☆117Updated 5 years ago
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data☆137Updated 2 weeks ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- Small utilities for working with fastq sequence files.☆124Updated 2 years ago
- ☆123Updated 8 months ago
- BWA-MEME: Faster BWA-MEM2 using learned-index☆121Updated last year
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆162Updated 10 months ago
- Whole Genome Simulator for Next-Generation Sequencing☆98Updated 7 months ago
- Scalable gVCF merging and joint variant calling for population sequencing projects☆163Updated last year
- A Tool for integrated Quality Control and Preprocessing on FASTQ or BAM/CRAM files☆109Updated last year
- Bayesian genotyper for structural variants☆134Updated 4 years ago
- Technology agnostic long read analysis pipeline for transcriptomes☆144Updated last year