shubhamchandak94 / SpringLinks
FASTQ compression
☆132Updated 2 years ago
Alternatives and similar repositories for Spring
Users that are interested in Spring are comparing it to the libraries listed below
Sorting:
- A fast lossless FASTQ compressor with ultra-high compression ratio☆142Updated 5 months ago
- SV detection from paired end reads mapping☆117Updated 6 years ago
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆194Updated last month
- Structural variation and indel detection by local assembly☆248Updated last month
- DRAGEN open-source mapper☆177Updated 2 years ago
- Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants …☆174Updated 5 years ago
- Whole Genome Simulator for Next-Generation Sequencing☆101Updated 10 months ago
- ABRA2☆93Updated 2 years ago
- BWA-MEME: Faster BWA-MEM2 using learned-index☆128Updated last year
- NEAT read simulation tools☆101Updated 3 years ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆160Updated 8 months ago
- ☆123Updated 3 months ago
- A tool for estimating repeat sizes☆198Updated last year
- A Tool for integrated Quality Control and Preprocessing on FASTQ or BAM/CRAM files☆110Updated last year
- ☆137Updated this week
- Short-read and long-read sequencing tools for diagnostics☆168Updated last week
- The DevNet project on github stores the PacBio DevNet website.☆116Updated 7 years ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆230Updated 3 years ago
- A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster to…☆171Updated last month
- Scalable gVCF merging and joint variant calling for population sequencing projects☆171Updated last year
- A minimap2 frontend for PacBio native data formats☆205Updated last month
- A tool set for short variant discovery in genetic sequence data.☆202Updated 4 years ago
- An efficient FASTQ manipulation suite☆138Updated 5 years ago
- This repository contains information about latest release from Genome in a Bottle project☆75Updated 6 years ago
- A structural variation pipeline for short-read sequencing☆194Updated this week
- Tool for stripping adaptors and/or merging paired reads with overlap into single reads.☆145Updated 9 years ago
- Tools for plotting methylation data in various ways