detection of duplications and deletions using Python based machine learning techniques
☆28Jul 22, 2019Updated 6 years ago
Alternatives and similar repositories for dudeml
Users that are interested in dudeml are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The ChIP-Seq peak calling algorithm using convolution neural networks☆15Jan 18, 2021Updated 5 years ago
- Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes☆11May 2, 2017Updated 8 years ago
- Genotyping of segregating mobile elements insertions☆19Jul 29, 2021Updated 4 years ago
- Genetic Map Comparison☆20Nov 10, 2022Updated 3 years ago
- Kdrew's scripts for handling protein complex map data☆14Jun 12, 2025Updated 10 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- CN-Learn☆30Jan 24, 2020Updated 6 years ago
- FQSqueezer - FASTQ compressor based on k-mer statistics☆17Feb 24, 2024Updated 2 years ago
- One-class classifiers for anomaly detection (outlier detection)☆16Sep 2, 2020Updated 5 years ago
- SV☆15May 3, 2018Updated 7 years ago
- 3D GWAS across multiple phenotypes☆13Oct 11, 2022Updated 3 years ago
- A software package for detection of copy number alterations from tumor samples☆12May 8, 2015Updated 10 years ago
- Recommended Graphtyper pipelines☆15Feb 22, 2021Updated 5 years ago
- Software for Nanopore Analysis☆10Mar 14, 2018Updated 8 years ago
- A tool for detecting CNVs from WGS data☆11Jul 9, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆13Apr 25, 2017Updated 8 years ago
- Obsolete!! Begin to turn to PrimerServer2☆10Jul 22, 2019Updated 6 years ago
- Scripts and resources for the haploblocks manuscript☆18Mar 20, 2020Updated 6 years ago
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Mar 6, 2023Updated 3 years ago
- A transposition caller.☆12Oct 5, 2023Updated 2 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25May 2, 2018Updated 7 years ago
- Study of TE evolution in a population of genomes☆10Dec 11, 2023Updated 2 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Sep 13, 2019Updated 6 years ago
- All JBrowse plugins created by Brigitte Hofmeister☆10Apr 27, 2018Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Sep 14, 2020Updated 5 years ago
- Population-scale genotyping using pangenome graphs☆197Jan 9, 2025Updated last year
- Fast, Accurate, and Complete SSR Detection in Genomic Sequences☆11Jun 29, 2020Updated 5 years ago
- Minimal Assumption Genomic Inference of Coalescence☆14Aug 8, 2023Updated 2 years ago
- Genome Annotation Without Nightmares☆46Feb 2, 2026Updated 2 months ago
- Tools for extracting read counts and gc and mappability statistics in preparation for running HMMCopy.☆44Jul 28, 2021Updated 4 years ago
- Using reference-free compressed data structures to analyse thousands of human genomes (1000 Genomes ReadServer)☆14Sep 23, 2017Updated 8 years ago
- ☆26Jul 28, 2016Updated 9 years ago
- A tool for phasing and imputing haplotypes in 10k+ low coverage sequencing samples☆10Nov 20, 2020Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Machine learning framework to quantify pathogenicity of structural variants☆12Dec 3, 2020Updated 5 years ago
- A tool for profiling long STRs from short reads☆106Apr 19, 2021Updated 5 years ago
- Browser based application for viewing bam alignments☆56Dec 16, 2016Updated 9 years ago
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Apr 23, 2019Updated 6 years ago
- ☆10Dec 20, 2022Updated 3 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Feb 1, 2021Updated 5 years ago
- Structural variant merging tool☆57Aug 23, 2024Updated last year