tomh1lll / dudeml
detection of duplications and deletions using Python based machine learning techniques
☆28Updated 5 years ago
Alternatives and similar repositories for dudeml:
Users that are interested in dudeml are comparing it to the libraries listed below
- Structural variant caller☆54Updated 3 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆48Updated 5 years ago
- ☆51Updated 5 years ago
- Master of Pores 2☆23Updated 4 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆40Updated 6 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- Structural variant merging tool☆49Updated 7 months ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated last year
- Evolutionary Transcriptomics with R☆42Updated last week
- Liftover VCF files☆17Updated 8 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 8 years ago
- ☆29Updated 4 years ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆40Updated this week
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆64Updated last week
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- ☆39Updated 7 months ago
- Population-wide Deletion Calling☆35Updated 7 months ago
- Error correction of ONT transcript reads☆58Updated last year
- Materials for Spring 2021 Applied Genomics Course☆53Updated 3 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 6 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆47Updated 4 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 6 months ago
- processing 10x genomics reads☆25Updated 5 years ago