tomh1lll / dudemlLinks
detection of duplications and deletions using Python based machine learning techniques
☆28Updated 5 years ago
Alternatives and similar repositories for dudeml
Users that are interested in dudeml are comparing it to the libraries listed below
Sorting:
- Adapters for trimming☆30Updated 6 years ago
- Structural variant caller☆54Updated 3 years ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆40Updated 6 years ago
- Population-wide Deletion Calling☆35Updated 2 months ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆56Updated last year
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Master of Pores 2☆23Updated 6 months ago
- Scripts to run several protocols to process and analyze Next-Generation Sequencing data☆17Updated last year
- Merge transcriptome assemblies☆31Updated 8 years ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 4 years ago
- ☆51Updated 5 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Structural variant merging tool☆52Updated 10 months ago
- processing 10x genomics reads☆26Updated 5 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- Evolutionary Transcriptomics with R☆43Updated this week
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 8 months ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- ☆29Updated 4 years ago
- Error correction of ONT transcript reads☆58Updated last year
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated 2 years ago
- Liftover VCF files☆18Updated 8 years ago
- Ultra-efficient taxonomic mapping of NGS data☆52Updated 4 years ago