Fastq compression
☆19Oct 3, 2019Updated 6 years ago
Alternatives and similar repositories for HARC
Users that are interested in HARC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- FQSqueezer - FASTQ compressor based on k-mer statistics☆17Feb 24, 2024Updated 2 years ago
- Compressor for Nanopore Sequencing Reads☆23Feb 10, 2023Updated 3 years ago
- FASTQ compression☆146Aug 15, 2023Updated 2 years ago
- FaStore - high-performance FASTQ files compressor☆19May 19, 2022Updated 3 years ago
- BEETL☆97Apr 15, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Compression☆18Jul 1, 2020Updated 5 years ago
- A space-efficient compressor based on the Re-Pair grammar☆10Apr 6, 2017Updated 8 years ago
- Implementation of eBWT using Prefix-free parse (PFP)☆14Jul 14, 2025Updated 8 months ago
- A FASTQ lossless compression algorithm especially designed for nanopore sequencing FASTQ files.☆10Jul 2, 2020Updated 5 years ago
- A Lossy compressor for Quality Scores in Genomic Data☆12Oct 4, 2016Updated 9 years ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- Optimal suffix sorting and LCP array construction for constant alphabets [IPL 2017]☆10Aug 17, 2018Updated 7 years ago
- A versatile compressor of third generation sequencing reads.☆52Mar 24, 2024Updated 2 years ago
- ☆51Feb 27, 2026Updated last month
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Read alignment with a multi-genome reference☆23Jan 14, 2020Updated 6 years ago
- High performance block-sorting data compression library☆343Feb 3, 2026Updated last month
- Difference calculations for the terminal☆12Dec 27, 2023Updated 2 years ago
- Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)☆57Mar 4, 2024Updated 2 years ago
- source code of the paper "RepLong - de novo repeat discovery from long reads"☆18Jan 4, 2025Updated last year
- Rails application for storing and parsing clinical exome VCF files. Gene annotations can be retrieved via Biomart integration from Ensemb…☆10May 7, 2017Updated 8 years ago
- Long read to reference genome mapping tool☆13Mar 14, 2024Updated 2 years ago
- hs-blastn, a fast and accurate nucleotide-nucleotide sequences aligner.☆27Aug 12, 2020Updated 5 years ago
- ☆22Nov 21, 2016Updated 9 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ☆24Aug 9, 2017Updated 8 years ago
- Python bindings to Succinct Data Structure Library 2.0☆34May 18, 2019Updated 6 years ago
- This is the GPress, a framework for querying GTF, GFF3 and expression files in a compressed form.☆11Oct 5, 2023Updated 2 years ago
- A toolkit to calculate polygenic scores using PLINK2, PRS-CS, RapidoPGS, or PRSice2.☆16Aug 16, 2024Updated last year
- A protocol to estimate global ancestry starting from raw Illumina data☆11Oct 16, 2019Updated 6 years ago
- A hash map using the BooPHF perfect hash function☆13Sep 25, 2016Updated 9 years ago
- De novo transcriptome assembler for short reads☆64Mar 12, 2018Updated 8 years ago
- extract SV signal from a BAM☆11Jul 26, 2018Updated 7 years ago
- A Simulator for Communication Systems☆13Jul 22, 2024Updated last year
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- analysis pipeline for CODEC data☆13Oct 27, 2025Updated 5 months ago
- Lightweight resources assembly algorithm☆19May 17, 2017Updated 8 years ago
- SUccinct Retrieval Framework☆21Jan 24, 2016Updated 10 years ago
- LEGACY repository for SODAR Core, preserved for saving review-related issues. See "sodar-core" for the up-to-date repository.☆15Jun 1, 2022Updated 3 years ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆24Jul 15, 2021Updated 4 years ago
- A PostgreSQL foreign data wrapper for VCF files.☆18May 8, 2017Updated 8 years ago
- Genoogle is a software for fast similar DNA sequence searching. It is a full functional similar genetics searching tool, having a text mo…☆13Apr 27, 2016Updated 9 years ago