Alternatives and similar repositories for HARC

Users that are interested in HARC are comparing it to the libraries listed below

• refresh-bio / fqsqueezer
  FQSqueezer - FASTQ compressor based on k-mer statistics
  ☆16Updated last year
• jltsiren / gcsa2
  BWT-based index for graphs
  ☆71Updated 3 months ago
• mkirsche / sapling
  SAPLING: Suffix Array Piecewise Linear INdex for Genomics
  ☆25Updated 4 years ago
• ParBLiSS / PaSGAL
  Parallel Sequence to Graph Alignment
  ☆37Updated 2 years ago
• mlin / iitii
  Implicit Interval Tree with Interpolation Index
  ☆41Updated 2 years ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 3 years ago
• refresh-bio / colord
  A versatile compressor of third generation sequencing reads.
  ☆51Updated last year
• ddiazdom / lcg
  Efficient, parallel compression for terabyte-scale data
  ☆47Updated last month
• ddiazdom / grlBWT
  Efficient construction of the BWT using string compression
  ☆18Updated 3 weeks ago
• ekg / fastahack
  utilities for indexing and sequence extraction from FASTA files
  ☆59Updated 4 years ago
• jeizenga / wfalm
  Refinements of the WFA alignment algorithm with better complexity
  ☆26Updated 3 years ago
• jltsiren / gbwt
  Substring index for paths in a graph
  ☆60Updated 2 months ago
• HingeAssembler / HINGE
  Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution"
  ☆64Updated 4 years ago
• ocxtal / dozeu
  SIMD-parallel BLAST X-drop DP on sequence graphs
  ☆25Updated last year
• jandrewrfarrell / RUFUS
  RUFUS k-mer based genomic variant detection
  ☆54Updated 5 months ago
• vgteam / gssw
  efficient alignment of strings to partially ordered string graphs
  ☆33Updated 3 years ago
• mklarqvist / tomahawk
  Fast calculations of linkage-disequilibrium in large-scale human cohorts
  ☆44Updated 5 years ago
• rob-p / BooM
  A hash map using the BooPHF perfect hash function
  ☆12Updated 8 years ago
• bkehr / popins
  Population-scale detection of novel sequence insertions
  ☆27Updated 2 years ago
• qm2 / NanoSpring
  Compressor for Nanopore Sequencing Reads
  ☆21Updated 2 years ago
• VGP / vgp-tools
  ☆28Updated 2 months ago
• ydLiu-HIT / deSALT
  deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads
  ☆44Updated 2 years ago
• arshajii / ema
  Fast & accurate alignment of barcoded short-reads
  ☆33Updated last year
• edawson / gfakluge
  A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
  ☆54Updated 3 years ago
• nanoporetech / vbz_compression
  VBZ compression plugin for nanopore signal data
  ☆40Updated 2 months ago
• bcgsc / ntCard
  Estimating k-mer coverage histogram of genomics data
  ☆77Updated last year
• smarco / BiWFA-paper
  Bidirectional WFA (Paper)
  ☆46Updated last year
• atifrahman / HAWK
  Hitting associations with k-mers
  ☆45Updated 3 years ago
• viq854 / bwbble
  Read alignment with a multi-genome reference
  ☆22Updated 5 years ago
• alshai / levioSAM
  Lift-over alignments from variant-aware references
  ☆34Updated 2 years ago