Handy scripts for routine bioinformatic analysis
☆21May 5, 2025Updated last year
Alternatives and similar repositories for BINF_toolkit
Users that are interested in BINF_toolkit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Orthoflow is a workflow for phylogenetic inference of genome-scale datasets of protein-coding genes.☆14Feb 24, 2025Updated last year
- A simple program for evaluate the assembly of a give genome.☆18Mar 3, 2023Updated 3 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Aug 8, 2022Updated 4 years ago
- Various scripts that I have created that are useful for genome annotation (repeats & proteins)☆17Feb 21, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 3 years ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆11Aug 11, 2026Updated 2 months ago
- A graduate-level elective course: Python Programming for Life Science Students☆10Mar 26, 2026Updated 7 months ago
- An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictog…☆13Oct 16, 2026Updated 3 weeks ago
- Repository☆10Oct 23, 2024Updated 2 years ago
- rapid phylogenomic tree calculator - A highly customizable framework for reproducible phylogenomic inference☆30Jul 1, 2026Updated 4 months ago
- This is something I have decided to do to make something good come out of the current covid situation. Here I will put the publicly avail…☆12Sep 6, 2021Updated 5 years ago
- R package for processing of GWAS output☆17Jul 9, 2024Updated 2 years ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆19Mar 26, 2023Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- The repository for codes developed to generated the Maize NC358 assemblies and analyses.☆10Apr 23, 2020Updated 6 years ago
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆39Jul 5, 2025Updated last year
- A toolkit to validate and consolidate antimicrobial resistance gene databases☆20Apr 21, 2023Updated 3 years ago
- ☆10Apr 10, 2016Updated 10 years ago
- Statistical Rethinking Course 2024 with Python☆10Jan 7, 2024Updated 2 years ago
- Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS☆10Jul 20, 2017Updated 9 years ago
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- PhenomeXcan: mapping the genome to the phenome through the transcriptome☆11Jun 28, 2020Updated 6 years ago
- A collection of snakemake scripts to streamline genome annotation☆14Mar 24, 2026Updated 7 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Westlake BioBank for Chinese pilot project☆10May 17, 2023Updated 3 years ago
- Code used to process and analyze structural variants and short tandem repeat variants profiled in 719 deeply sequenced whole genomes as p…☆11Jun 25, 2019Updated 7 years ago
- ☆10May 17, 2022Updated 4 years ago
- ☆10Mar 4, 2025Updated last year
- ☆12Jun 12, 2023Updated 3 years ago
- A curated list (with links) of useful tools for genome-wide association analysis.☆11Mar 1, 2019Updated 7 years ago
- A Nextflow lncRNA Annotation Pipeline based on STAR, Cufflinks and FEELnc☆11Apr 2, 2018Updated 8 years ago
- Standard operating procedures for H3ABionet data processing and analyses☆11Aug 30, 2021Updated 5 years ago
- Data Visualizations for the #30DayChartChallenge☆11Apr 15, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Contributions to the #30daychartchallenge☆11Apr 10, 2025Updated last year
- Plot allele frequencies in VCF files☆11Apr 13, 2026Updated 6 months ago
- ☆10Apr 13, 2022Updated 4 years ago
- GenomeTools: Scripts and Classes for Working with Genomic Data☆12Jun 7, 2018Updated 8 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆29Apr 11, 2018Updated 8 years ago
- ☆11Jan 14, 2025Updated last year
- ☆12May 8, 2021Updated 5 years ago