wanyuac / BINF_toolkitLinks
Handy scripts for routine bioinformatic analysis
☆21Updated 7 months ago
Alternatives and similar repositories for BINF_toolkit
Users that are interested in BINF_toolkit are comparing it to the libraries listed below
Sorting:
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆51Updated last year
- Synteny Imager☆65Updated this week
- Transcripts annotation and GO enrichment Fisher tests☆27Updated 2 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Updated 2 years ago
- paml documentation and tutorials☆64Updated 7 months ago
- meta-pipeline for repetitive element de-fragmentation and annotation☆28Updated 5 years ago
- A shiny application to visualize MCscan result☆38Updated 3 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated 10 months ago
- collection of bioinformatic scripts☆31Updated last year
- Automatically exported from code.google.com/p/prottest3☆38Updated 7 years ago
- A collection of scripts for processing fastq files in ways to improve de novo transcriptome assemblies, and for evaluating those assembli…☆51Updated last year
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆38Updated 2 years ago
- Documentation for Evolview☆29Updated 4 years ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆60Updated 3 weeks ago
- k-mer learning materials☆81Updated 10 months ago
- TSEBRA: Transcript Selector for BRAKER☆49Updated last month
- Automated de novo assembly of whole chloroplast genomes.☆47Updated last year
- Genome Annotation Pipeline☆42Updated last year
- Automates running of OrthoMCL software from http://orthomcl.org/common/downloads/software/v2.0/☆80Updated 5 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.☆67Updated 2 years ago
- A (very) simple script to QC Hi-C data.☆26Updated last year
- Construct ab initio gene prediction using only BUSCO augustus models. Add in transcriptome for extra support☆22Updated 2 years ago
- Collection of scripts for bacterial genomics☆48Updated 6 years ago
- Conditional Reciprocal Best Blast☆42Updated 8 years ago
- STAG: Species Tree from All Genes☆34Updated 7 years ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆56Updated last month
- A program to call variants from genome alignment☆81Updated 7 months ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago