Alternatives and similar repositories for pmvae:

Users that are interested in pmvae are comparing it to the libraries listed below

• scverse / scvi-tools-skeleton
  Template repository for creating novel models with scvi-tools
  ☆19Updated 2 years ago
• cellarium-ai / cellarium-ml
  Distributed single-cell data analysis.
  ☆28Updated this week
• YosefLab / scib-metrics
  Accelerated, Python-only, single-cell integration benchmarking metrics
  ☆54Updated this week
• theislab / prophet
  ☆28Updated last month
• adamgayoso / mplscience
  Matplotlib style for scientific publications
  ☆13Updated this week
• jkobject / scDataLoader
  a dataloader to work with large single cell datasets from lamindb
  ☆21Updated last week
• theislab / multicpa
  ☆13Updated 2 years ago
• nitzanlab / biolord
  ☆72Updated 6 months ago
• MarioniLab / sagenet
  Spatial reconstruction of dissociated single-cell data
  ☆17Updated last year
• scverse / pytometry
  Flow & mass cytometry analytics.
  ☆43Updated last week
• Genentech / sVAE
  ☆58Updated last year
• saezlab / progeny-py
  PROGENY Python implementation
  ☆12Updated 2 years ago
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆49Updated 3 years ago
• altoslabs / perturbench
  ☆23Updated last month
• atarashansky / SCTransformPy
  A python port of the R package SCTransform:
  ☆19Updated 3 years ago
• jkobject / scPRINT
  single cell foundation model for Gene network inference and more
  ☆15Updated 5 months ago
• zcang / SpaOTsc
  ☆45Updated 2 years ago
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆67Updated last year
• theislab / sc-pert
  Models and datasets for perturbational single-cell omics
  ☆148Updated 2 years ago
• chanzuckerberg / scEvalsJam
  ☆12Updated 5 months ago
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆57Updated 2 years ago
• gifford-lab / prescient
  Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.
  ☆45Updated last month
• dylkot / scsim
  Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…
  ☆26Updated 3 years ago
• wukevin / tcr-bert
  Large language modeling applied to T-cell receptor (TCR) sequences.
  ☆49Updated 2 years ago
• lilab-bcb / harmony-pytorch
  ☆51Updated last year
• scverse / simple-scvi
  Simple scVI implementation
  ☆10Updated this week
• Genentech / decima
  Decima is a Python library to train sequence models on single-cell RNA-seq data.
  ☆24Updated 4 months ago
• BIMSBbioinfo / bavaria
  Batch-adversarial variational auto-encoder (BAVARIA) for simultaneous dimensionality reduction and integration of single-cell ATAC-seq da…
  ☆13Updated last year
• welch-lab / PerturbNet
  PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation
  ☆29Updated 2 weeks ago
• theislab / graphcompass
  GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems
  ☆35Updated last month