jkobject / scPRINT
single cell foundation model for Gene network inference and more
☆13Updated 2 months ago
Related projects ⓘ
Alternatives and complementary repositories for scPRINT
- Accelerated, Python-only, single-cell integration benchmarking metrics☆49Updated this week
- End-to-end analysis of spatial multi-omics data☆35Updated last month
- Additional code and analysis from the single-cell integration benchmarking project☆55Updated last year
- ☆68Updated 3 months ago
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆109Updated 2 months ago
- Spatial reconstruction of dissociated single-cell data☆17Updated 10 months ago
- ☆49Updated 2 months ago
- ☆44Updated last year
- scNODE: Generative Model for Temporal Single Cell Transcriptomic Data Prediction☆17Updated last month
- ☆16Updated 3 years ago
- ☆12Updated 2 months ago
- Spatial direct messaging detected by bivariate Moran☆24Updated this week
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆25Updated this week
- ☆25Updated 3 months ago
- Template repository for creating novel models with scvi-tools☆19Updated last year
- single cell foundation model for Gene network inference and more☆27Updated this week
- Single cell omics biology annotations☆48Updated 2 months ago
- spatial transcriptome, single cell☆65Updated last year
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆19Updated last month
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆39Updated last year
- Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics☆28Updated 2 weeks ago
- Python implementation of the Slingshot pseudotime algorithm☆51Updated 6 months ago
- Predict RNA velocity through deep learning☆64Updated 11 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆60Updated last year
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆105Updated 10 months ago
- ☆23Updated last year
- ☆47Updated 9 months ago
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆109Updated this week
- ☆38Updated last month
- ☆32Updated 9 months ago