Alternatives and similar repositories for scPRINT

Users that are interested in scPRINT are comparing it to the libraries listed below

• MarioniLab / sagenet
  Spatial reconstruction of dissociated single-cell data
  ☆19Updated last year
• nitzanlab / biolord
  ☆87Updated last year
• YosefLab / scib-metrics
  Accelerated, Python-only, single-cell integration benchmarking metrics
  ☆79Updated this week
• theislab / DRVI
  Unsupervised Deep Disentangled Representation of Single-Cell Omics
  ☆56Updated last week
• andreariba / DeepCycle
  Cell cycle inference in single-cell RNA-seq
  ☆51Updated 2 years ago
• jkobject / scDataLoader
  a dataloader to work with large single cell datasets from lamindb
  ☆30Updated last week
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆71Updated 2 years ago
• Lotfollahi-lab / nichecompass
  End-to-end analysis of spatial multi-omics data
  ☆97Updated last month
• theislab / scTab
  ☆61Updated last year
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆50Updated 7 months ago
• zcang / SpaOTsc
  ☆45Updated 4 months ago
• prabhakarlab / Banksy_py
  BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …
  ☆69Updated 3 weeks ago
• emdann / milopy
  Python implementation of Milo for differential abundance testing on KNN graph
  ☆76Updated 9 months ago
• gifford-lab / prescient
  Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.
  ☆50Updated 10 months ago
• scverse / scvi-tools-skeleton
  Template repository for creating novel models with scvi-tools
  ☆20Updated 2 years ago
• SONGDONGYUAN1994 / scDesign3
  scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics
  ☆109Updated 2 months ago
• Spencerfar / LatentVelo
  ☆26Updated 2 years ago
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆69Updated 2 years ago
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆154Updated 9 months ago
• simonwm / tacco
  TACCO: Transfer of Annotations to Cells and their COmbinations
  ☆62Updated 3 months ago
• dpeerlab / ENVI
  ☆50Updated last month
• bowang-lab / DeepVelo
  ☆46Updated last year
• lilab-bcb / harmony-pytorch
  ☆58Updated 6 months ago
• welch-lab / MultiVelo
  Multi-omic velocity inference
  ☆113Updated last year
• cantinilab / scPRINT
  🏃 The go-to single-cell Foundation Model
  ☆123Updated this week
• cantinilab / Circe
  Co-accessibility network from single-cell ATAC-seq data. Python code with AnnData, based on Cicero algorithm.
  ☆29Updated last week
• theislab / multimil
  Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases
  ☆35Updated 2 months ago
• shuxiaoc / maxfuse
  ☆56Updated last year
• theislab / prophet
  ☆38Updated last month
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆66Updated 4 months ago