single cell foundation model for Gene network inference and more
☆20May 20, 2026Updated 3 months ago
Alternatives and similar repositories for scPRINT
Users that are interested in scPRINT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A novel method for single-cell diagonal integration: scConfluence☆28Nov 3, 2025Updated 9 months ago
- Co-accessibility network from single-cell ATAC-seq data. Python code with AnnData, based on Cicero algorithm.☆35May 23, 2026Updated 3 months ago
- Single Cell Pretrained Regulatory network INference from Transcripts☆11Sep 17, 2024Updated last year
- 🏃 The go-to single-cell Foundation Model☆157Aug 11, 2026Updated 2 weeks ago
- Benchmark gene representations from different model families☆16May 29, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Learning cell fate landscapes from spatial transcriptomics using Fused Gromov-Wasserstein☆32Oct 21, 2025Updated 10 months ago
- ☆12Aug 29, 2024Updated 2 years ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆27Aug 30, 2024Updated 2 years ago
- a dataloader to work with large single cell datasets from lamindb☆41Updated this week
- Deep joint-leaning single-cell multi-omics model☆16Jun 27, 2022Updated 4 years ago
- Python package for the ICML 2022 paper "Unsupervised Ground Metric Learning Using Wasserstein Singular Vectors".☆10Sep 2, 2024Updated last year
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆43Feb 3, 2023Updated 3 years ago
- Single-cell multi-omics integration using Optimal Transport☆55Aug 14, 2025Updated last year
- ☆40Feb 24, 2026Updated 6 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆52Jan 17, 2022Updated 4 years ago
- ☆17Aug 23, 2026Updated last week
- 🏃🏃 Your next-gen single-cell Foundation Model☆38Updated this week
- Code for the paper: "Abide by the Law and Follow the Flow: Conservation Laws for Gradient Flows".☆12Feb 24, 2024Updated 2 years ago
- ☆427Nov 23, 2025Updated 9 months ago
- Implementation of our Delaunay based rough/multi-stroke sketches simplification work☆12Jan 18, 2020Updated 6 years ago
- A GWAS fine-mapping pipeline used in CAUSALdb☆27May 1, 2022Updated 4 years ago
- R package to analyze single cell DNA sequencing data.☆11Updated this week
- Identification of persistent local patterns in spatial omics data☆18May 6, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Official repository for discrete Walk-Jump Sampling (dWJS)☆58Dec 17, 2023Updated 2 years ago
- ☆71Jul 21, 2023Updated 3 years ago
- Diffusion model for gene regulatory network inference.☆30Jul 19, 2026Updated last month
- Generative Pretraining from Transcriptomes☆17Feb 6, 2023Updated 3 years ago
- All the submission scripts used for my work on Jean Zay and the TGCC☆15Jul 17, 2023Updated 3 years ago
- Single cell epigenomic clustering based on accessibility pattern☆24Nov 9, 2022Updated 3 years ago
- A python package for chromVAR☆34May 1, 2023Updated 3 years ago
- Foundation of integer range manipulation in Bioconductor☆24Updated this week
- Coherent Deconfounding Autoencoder (CODE-AE) can extract both common biological signals shared by incoherent samples and private represen…☆21Oct 1, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Public Codebase supporting the paper "Modeling Cellular Perturbations with The Sparse Additive Mechanism Shift Variational Autoencoder" b…☆16Oct 20, 2023Updated 2 years ago
- Diagnostic functions to assess the quality of cell type annotations in single-cell RNA sequencing data☆16Jul 7, 2026Updated last month
- ☆21Dec 19, 2024Updated last year
- Tools for sgRNA calling in direct capture Perturb-seq data☆42Jun 18, 2023Updated 3 years ago
- Efficient retrieval head analysis with triton flash attention that supports topK probability☆13Jun 15, 2024Updated 2 years ago
- End-to-end analysis of spatial multi-omics data☆124Updated this week
- Reproducible analyses for the NicheCompass manuscript☆14Updated this week