Alternatives and similar repositories for scPRINT

Users that are interested in scPRINT are comparing it to the libraries listed below

• YosefLab / scib-metrics
  Accelerated, Python-only, single-cell integration benchmarking metrics
  ☆72Updated this week
• nitzanlab / biolord
  ☆84Updated last year
• MarioniLab / sagenet
  Spatial reconstruction of dissociated single-cell data
  ☆19Updated last year
• theislab / DRVI
  Unsupervised Deep Disentangled Representation of Single-Cell Omics
  ☆51Updated last week
• theislab / prophet
  ☆35Updated last week
• scverse / scvi-tools-skeleton
  Template repository for creating novel models with scvi-tools
  ☆20Updated 2 years ago
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆70Updated 2 years ago
• Genentech / decima
  Decima is a Python library to train sequence models on single-cell RNA-seq data.
  ☆47Updated this week
• Lotfollahi-lab / nichecompass
  End-to-end analysis of spatial multi-omics data
  ☆93Updated last month
• chanzuckerberg / cellxgene-census
  CZ CELLxGENE Discover Census
  ☆109Updated last week
• zcang / SpaOTsc
  ☆45Updated 2 months ago
• scverse / scvi-tutorials
  Notebooks used in scvi-tools tutorials
  ☆55Updated this week
• lilab-bcb / harmony-pytorch
  ☆56Updated 4 months ago
• gifford-lab / prescient
  Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.
  ☆49Updated 8 months ago
• altoslabs / perturbench
  ☆42Updated 4 months ago
• welch-lab / MultiVelo
  Multi-omic velocity inference
  ☆111Updated 11 months ago
• SONGDONGYUAN1994 / scDesign3
  scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics
  ☆103Updated this week
• bowang-lab / DeepVelo
  ☆46Updated last year
• cantinilab / scPRINT
  single cell foundation model
  ☆106Updated last week
• calico / scBasset
  Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.
  ☆98Updated 3 weeks ago
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆67Updated 2 years ago
• nceglia / genevector
  Vector representations of gene co-expression in single cell RNAseq.
  ☆36Updated 4 months ago
• mossjacob / pyslingshot
  Python implementation of the Slingshot pseudotime algorithm
  ☆64Updated last year
• jkobject / scDataLoader
  a dataloader to work with large single cell datasets from lamindb
  ☆29Updated last week
• theislab / sc-pert
  Models and datasets for perturbational single-cell omics
  ☆163Updated 3 years ago
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆148Updated 7 months ago
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆64Updated 2 months ago
• pinellolab / dictys
  Context specific and dynamic gene regulatory network reconstruction and analysis
  ☆122Updated 3 weeks ago
• emdann / milopy
  Python implementation of Milo for differential abundance testing on KNN graph
  ☆74Updated 7 months ago
• cantinilab / Circe
  Co-accessibility network from single-cell ATAC-seq data. Python code with AnnData, based on Cicero algorithm.
  ☆23Updated last week