Notebooks used in scvi-tools tutorials
☆64May 19, 2026Updated this week
Alternatives and similar repositories for scvi-tutorials
Users that are interested in scvi-tutorials are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Template repository for creating novel models with scvi-tools☆20Jan 18, 2023Updated 3 years ago
- Genomic Features in Python from BioConductor's AnnotationHub☆23Apr 27, 2026Updated 3 weeks ago
- Deep probabilistic analysis of single-cell and spatial omics data☆1,623May 14, 2026Updated last week
- Spatial reconstruction of dissociated single-cell data☆19Jan 12, 2024Updated 2 years ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆41Jul 1, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Reproducing the experiments of the DestVI paper☆24Feb 9, 2022Updated 4 years ago
- Accelerated, Python-only, single-cell integration benchmarking metrics☆92May 12, 2026Updated last week
- ☆18Sep 13, 2022Updated 3 years ago
- Automated quantitative analysis of DIA proteomics mass spectrometry measurements.☆21Jan 13, 2025Updated last year
- ☆17Jun 6, 2022Updated 3 years ago
- Scripts from the GBM cellular states paper☆21Feb 24, 2021Updated 5 years ago
- 🚀 A simple way to train and use PyTorch models with multi-GPU, TPU, mixed-precision☆19Jun 7, 2023Updated 2 years ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆34Nov 28, 2025Updated 5 months ago
- Collection of scripts for analysis of pan fetal immune atlas☆32Aug 11, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- for YouTube Channel☆16Jun 11, 2017Updated 8 years ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 3 years ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆28Feb 4, 2023Updated 3 years ago
- Reference mapping for single-cell genomics☆404Mar 21, 2026Updated 2 months ago
- Multimodal Data (.h5mu) implementation for Python☆121Updated this week
- Spatial Single Cell Analysis in Python☆571Updated this week
- A scanpy extension to analyse single-cell TCR and BCR data.☆252May 11, 2026Updated last week
- Convert between AnnData and SingleCellExperiment☆149Updated this week
- Code for scKINETICS (ISMB 2023)☆22Oct 23, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- codes for article☆18Jan 14, 2026Updated 4 months ago
- Regulatory network inference and driver gene evaluation using integrative multi-omics analysis and penalized regression☆17Jan 26, 2026Updated 3 months ago
- CZ CELLxGENE Discover Census☆123Jan 14, 2026Updated 4 months ago
- A tool for semi-automatic cell type classification☆476Updated this week
- ☆13Nov 3, 2023Updated 2 years ago
- A tutorial on how to create bioinformatics pipelines as bash scripts, Makefiles and using tools like Nextflow.☆17Nov 14, 2022Updated 3 years ago
- A Toolbox for Spatial Transcriptomics Analysis☆167May 6, 2025Updated last year
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆188Mar 27, 2025Updated last year
- Single cell perturbation prediction☆343Dec 5, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from…☆34Apr 30, 2026Updated 3 weeks ago
- Trans-association between HLA and TCR-CDR3☆19Mar 29, 2023Updated 3 years ago
- Nonnegative spatial factorization for multivariate count data☆66Jun 28, 2023Updated 2 years ago
- CellRank: dynamics from multi-view single-cell data☆449May 4, 2026Updated 2 weeks ago
- Code used to process the data of the HBCA project☆33Feb 9, 2024Updated 2 years ago
- Signature Analysis and Visualization for Single-Cell RNA-seq☆179Jun 10, 2024Updated last year
- scDCC: Single Cell Deep Constrained Clustering☆45Jul 10, 2024Updated last year