Batch-adversarial variational auto-encoder (BAVARIA) for simultaneous dimensionality reduction and integration of single-cell ATAC-seq datasets
☆15May 15, 2023Updated 3 years ago
Alternatives and similar repositories for bavaria
Users that are interested in bavaria are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Oct 23, 2023Updated 2 years ago
- ☆27Jul 30, 2025Updated 10 months ago
- Single Cell Generative Adversarial Network (scGAN)☆15May 29, 2020Updated 6 years ago
- Cosmological map inference with deep learning☆15Nov 3, 2021Updated 4 years ago
- ☆27Dec 15, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Code required to reproduce the analysis made in Kiviaho et al. 2024☆12Nov 29, 2024Updated last year
- Exploratory Principal Component Analysis☆11May 6, 2024Updated 2 years ago
- ☆12Mar 7, 2023Updated 3 years ago
- ☆10Sep 9, 2023Updated 2 years ago
- Fit generalized linear models in python.☆28Mar 6, 2023Updated 3 years ago
- cross-species analysis of cell identities, markers and regulations☆13Jul 11, 2025Updated 11 months ago
- GitHub Actions for developing and maintaining Bioconductor packages☆13May 26, 2026Updated 3 weeks ago
- ☆15Jan 24, 2023Updated 3 years ago
- ☆11Oct 21, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Accurate and fast cell marker gene identification with COSG☆66Feb 8, 2026Updated 4 months ago
- Pre-clinical drug discovery faces the low efficiency dilemma. One of the reasons is the lack of cross-drug efficacy evaluation infrastruc…☆14Dec 8, 2025Updated 6 months ago
- Analysis of snRNA-seq2 data coming from 3 months old mouse liver, dissecting the influence ploidy has on gene expression.☆14Dec 6, 2021Updated 4 years ago
- SingleCellFusion--a tool to integrate single-cell transcriptome and epigenome data☆12Mar 13, 2022Updated 4 years ago
- ☆14Jun 3, 2022Updated 4 years ago
- A Python toolkit for dimensionality reduction quality assessment☆19Apr 19, 2026Updated last month
- Simple matching of HTS samples based on HLA typing☆14Jan 4, 2017Updated 9 years ago
- Review and analysis of the ICML 2017 best paper: "Understanding Black-box Predictions via Influence Functions"☆12Mar 16, 2018Updated 8 years ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆32Nov 16, 2020Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Web-first Visualisation platform for Multidimensional Data☆19Mar 20, 2025Updated last year
- BitSeq code☆16Jun 21, 2021Updated 4 years ago
- Variational Auto Encoders for learning binding signatures of transcription factors☆14Mar 14, 2024Updated 2 years ago
- ☆11Jul 31, 2019Updated 6 years ago
- ☆13Feb 3, 2026Updated 4 months ago
- ESANN20 paper code repository. This package is a perplexity-free extension of Parametric t-SNE dimensionality reduction method implemente…☆23Mar 24, 2023Updated 3 years ago
- Python version of FastPM☆12Jul 20, 2020Updated 5 years ago
- Axolotl Regenerative Telencehpalon Interpretation via Spatiotemporal Transcriptomic Atlas☆21Jul 3, 2022Updated 3 years ago
- Camiel's scATAC-seq analysis pipeline☆14Apr 15, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- KDD Hands-On Tutorial (2018)☆29Dec 8, 2022Updated 3 years ago
- A light weight shiny based web app to access TCGA data☆15Apr 29, 2015Updated 11 years ago
- The Agentic BioML Challenge + AutoBioML framework☆18Jun 3, 2025Updated last year
- ☆14Apr 8, 2018Updated 8 years ago
- PROGENY Python implementation☆12Apr 5, 2022Updated 4 years ago
- Rocking R at UMCCR☆10Oct 11, 2020Updated 5 years ago
- ☆16Jan 24, 2023Updated 3 years ago