Batch-adversarial variational auto-encoder (BAVARIA) for simultaneous dimensionality reduction and integration of single-cell ATAC-seq datasets
☆16May 15, 2023Updated 3 years ago
Alternatives and similar repositories for bavaria
Users that are interested in bavaria are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Repository for the tutorials of STARNet, a computational framework designed to decipher spatially specific gene regulatory networks (GRNs…☆16Jun 9, 2026Updated 4 months ago
- ☆12Oct 23, 2023Updated 3 years ago
- PiGx SARS-CoV-2 wastewater sequencing pipeline☆18May 3, 2023Updated 3 years ago
- Single Cell Generative Adversarial Network (scGAN)☆15May 29, 2020Updated 6 years ago
- ☆12Mar 31, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Single-cell dimensionality reduction evaluation and benchmarking toolkit☆13Sep 4, 2026Updated 2 months ago
- Exploratory Principal Component Analysis☆12May 6, 2024Updated 2 years ago
- The deconvR is an R package designed for analyzing deconvolution of the bulk sample(s) using an atlas of reference omic signature profile…☆11Jul 22, 2026Updated 3 months ago
- ☆29Dec 15, 2021Updated 4 years ago
- ☆11Nov 27, 2025Updated 11 months ago
- Collections of transcription factor binding motifs for the software suite Regulatory Sequence Analysis Tools (RSAT)☆11May 16, 2026Updated 5 months ago
- Graph based data integration with UMAP☆11Oct 15, 2020Updated 6 years ago
- Code required to reproduce the analysis made in Kiviaho et al. 2024☆12Nov 29, 2024Updated last year
- Feature Clock: High-Dimensional Effects in Two-Dimensional Plots☆14Jul 17, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- single cell RNA-seq analysis template based on online resources☆11Jul 1, 2018Updated 8 years ago
- SNAPPY Nucleic Acid Processing in Python☆10Oct 26, 2026Updated last week
- ☆10Sep 9, 2023Updated 3 years ago
- v2rayN官方下载☆10Aug 2, 2023Updated 3 years ago
- Interactive quality analysis for two-dimensional embeddings☆15Oct 14, 2025Updated last year
- ☆11Jul 31, 2019Updated 7 years ago
- A deep learning toolkit for LINCS L1000 expression data☆10Aug 25, 2021Updated 5 years ago
- SMILE: Mutual Information Learning for Integration of Single Cell Omics Data☆11Mar 28, 2023Updated 3 years ago
- Pre-clinical drug discovery faces the low efficiency dilemma. One of the reasons is the lack of cross-drug efficacy evaluation infrastruc…☆14Dec 8, 2025Updated 10 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A composite regression neural network for latent timing prediction of single-cell RNA-seq data☆10Jan 21, 2025Updated last year
- Fit generalized linear models in python.☆28Mar 6, 2023Updated 3 years ago
- Splicing-aware time-course network enricher - exploratory analysis for transcriptomics and/or proteomics time series data☆11Dec 11, 2025Updated 10 months ago
- ☆15Jan 24, 2023Updated 3 years ago
- The CICA/IoA HPC cluster☆17Jun 5, 2020Updated 6 years ago
- cross-species analysis of cell identities, markers and regulations☆13Jul 11, 2025Updated last year
- Review and analysis of the ICML 2017 best paper: "Understanding Black-box Predictions via Influence Functions"☆12Mar 16, 2018Updated 8 years ago
- GitHub Actions for developing and maintaining Bioconductor packages☆13May 26, 2026Updated 5 months ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆33Nov 16, 2020Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Prediction of HER2 overexpression status and IHC score as seen in "Predicting the HER2 status in esophageal cancer from tissue microarray…☆12Aug 19, 2022Updated 4 years ago
- ☆14Jun 3, 2022Updated 4 years ago
- Harness + per-model results for evaluating the omicos agent on phylobio/BiomniBench-DA. 50 tasks × 7 models, 6-dimension capability radar…☆15May 29, 2026Updated 5 months ago
- ☆11Oct 21, 2023Updated 3 years ago
- SPRUCE: Somatic Phylogeny Reconstruction using Combinatorial Enumeration☆14Jun 6, 2018Updated 8 years ago
- ☆14Sep 22, 2026Updated last month
- ☆13Oct 24, 2026Updated 2 weeks ago