BIMSBbioinfo / bavaria
Batch-adversarial variational auto-encoder (BAVARIA) for simultaneous dimensionality reduction and integration of single-cell ATAC-seq datasets
☆13Updated last year
Alternatives and similar repositories for bavaria:
Users that are interested in bavaria are comparing it to the libraries listed below
- Template repository for creating novel models with scvi-tools☆19Updated 2 years ago
- ☆45Updated 2 years ago
- using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions☆56Updated 3 years ago
- Spatial reconstruction of dissociated single-cell data☆17Updated last year
- An unsupervised scRNA-seq analysis workflow with graph attention networks☆24Updated last year
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆49Updated 3 years ago
- Code for pmVAE model, seen in ICML CompBio '21☆12Updated 11 months ago
- ☆14Updated 2 years ago
- spatial transcriptome, single cell☆67Updated 2 years ago
- ☆23Updated 2 months ago
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆37Updated 2 years ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆23Updated last year
- ☆57Updated 6 months ago
- End-to-end analysis of spatial multi-omics data☆41Updated last month
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆40Updated last year
- ☆16Updated 2 years ago
- cTPnet Package☆24Updated 2 years ago
- Reproducing the experiments of the DestVI paper☆18Updated 3 years ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- ☆14Updated 2 years ago
- Simultaneous deep generative modeling and clustering of single cell genomic data☆30Updated 2 years ago
- ☆17Updated 3 years ago
- ☆10Updated last year
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆26Updated 3 years ago
- repository containing analysis scripts and auxiliary files☆33Updated 4 years ago
- ☆51Updated 4 months ago
- ☆12Updated last year
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆61Updated 10 months ago
- scGCN is a graph convolutional networks algorithm for knowledge transfer in single cell omics☆41Updated 2 years ago
- ☆24Updated 5 months ago