Alternatives and similar repositories for bavaria

Users that are interested in bavaria are comparing it to the libraries listed below

• scverse / scvi-tools-skeleton
  Template repository for creating novel models with scvi-tools
  ☆20Updated 2 years ago
• davidbuterez / CellVGAE
  An unsupervised scRNA-seq analysis workflow with graph attention networks
  ☆26Updated 2 years ago
• zcang / SpaOTsc
  ☆45Updated 2 years ago
• MarioniLab / sagenet
  Spatial reconstruction of dissociated single-cell data
  ☆18Updated last year
• altoslabs / perturbench
  ☆28Updated last month
• scverse / simple-scvi
  Simple scVI implementation
  ☆11Updated this week
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆50Updated 3 years ago
• theislab / multicpa
  ☆14Updated 2 years ago
• ChengF-Lab / autoCell
  ☆16Updated 3 years ago
• theislab / scgen-reproducibility
  ☆28Updated 4 years ago
• shuxiaoc / mario-py
  MARIO: single-cell proteomic data matching and integration using both shared and distinct features
  ☆22Updated last year
• zhouzilu / cTPnet
  cTPnet Package
  ☆25Updated 2 years ago
• calico / scnym
  Semi-supervised adversarial neural networks for classification of single cell transcriptomics data
  ☆75Updated 5 months ago
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆63Updated last year
• theislab / scTab
  ☆59Updated 9 months ago
• theislab / prophet
  ☆34Updated last month
• xiaoyeye / GCNG
  using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions
  ☆56Updated 4 years ago
• mossjacob / pyslingshot
  Python implementation of the Slingshot pseudotime algorithm
  ☆61Updated last year
• jiang-q19 / scPRAM
  scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism
  ☆14Updated 8 months ago
• cole-trapnell-lab / sci-plex
  repository containing analysis scripts and auxiliary files
  ☆34Updated 5 years ago
• Su-informatics-lab / DSTG
  Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence
  ☆39Updated 2 years ago
• aristoteleo / Scribe-py
  Regulatory networks with Direct Information in python
  ☆40Updated 2 years ago
• decomverse / ACTIONet
  ACTIONet single-cell analysis framework
  ☆41Updated 9 months ago
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆68Updated 2 years ago
• YosefLab / totalVI_reproducibility
  ☆16Updated 2 years ago
• saezlab / greta
  Benchmark of GRNs using the GRETA pipeline
  ☆24Updated 3 months ago
• saezlab / omnipath
  Python client for the OmniPath web service
  ☆45Updated last month
• pqiu / cooccurrence_clustering
  ☆13Updated 5 years ago
• jingshuw / SAVERX
  R package for transfer learning of single-cell RNA-seq denoising
  ☆30Updated 3 years ago
• kodaim1115 / scMM
  ☆17Updated 3 years ago