Decima is a Python library to train sequence models on single-cell RNA-seq data.
☆87Jun 4, 2026Updated 4 months ago
Alternatives and similar repositories for decima
Users that are interested in decima are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆99Jun 10, 2026Updated 3 months ago
- Analyses related to the Borzoi paper.☆32Oct 1, 2026Updated last week
- Machine learning methods for DNA sequence analysis.☆66Sep 30, 2026Updated last week
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆365Updated this week
- Evaluating genomic sequence models for explaining personalized expression variation☆20Dec 6, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- RNA-seq prediction with deep convolutional neural networks.☆267Sep 30, 2026Updated last week
- Biological sequence analysis for the modern age.☆317Updated this week
- ☆37Jan 27, 2025Updated last year
- This repository hosts a minimal version of a Python API for BPNet.☆60Jul 19, 2026Updated 2 months ago
- Toolset for training quantitative sequence to function models.☆23Mar 15, 2024Updated 2 years ago
- ☆25Aug 20, 2024Updated 2 years ago
- A method for analyzing scATAC-seq experiments.☆33Jun 20, 2025Updated last year
- Annotated sequence data☆11Feb 2, 2025Updated last year
- An end-to-end computational pipeline for large Perturb-seq screens☆16Jul 27, 2026Updated 2 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Causal discovery of gene regulatory programs from single-cell genomics☆24Sep 5, 2025Updated last year
- A framework to score and analyze variant effects genome-wide using ChromBPNet models☆21Mar 2, 2026Updated 7 months ago
- One interface to nine genomic deep-learning oracles — variant effect prediction, calibrated per-track percentiles, and plain-English anal…☆69Aug 28, 2026Updated last month
- Code for improving the performance of sequence-to-expression models for making individual-specific gene expression predictions by fine-tu…☆20Mar 15, 2026Updated 6 months ago
- A Large-Scale Dataset and Framework for Genomic Foundation Model Benchmarking☆32Sep 1, 2026Updated last month
- ☆14Jan 23, 2025Updated last year
- scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.☆69Aug 10, 2026Updated last month
- Robust and efficient analysis of single-cell perturbation studies☆16Sep 24, 2026Updated 2 weeks ago
- Enformer Celltyping is a tensorflow, multi-headed attention based model that incorporates distal effects of Deoxyribonucleic Acid (DNA) i…☆18Jun 25, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- For fine-tuning Enformer using paired WGS & gene expression data☆32Aug 27, 2025Updated last year
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆41Mar 27, 2025Updated last year
- Genomic sequence preprocessing toolkit☆14Sep 26, 2026Updated last week
- ☆52Mar 22, 2026Updated 6 months ago
- FlashRNA - An Efficient Model for Regulatory Genomics☆19Oct 15, 2025Updated 11 months ago
- AlphaGenome PyTorch port☆162Sep 15, 2026Updated 3 weeks ago
- Learning meaningful representations of genes☆21Jul 7, 2025Updated last year
- Parse ArchR arrow files to anndata h5ad☆17Dec 14, 2023Updated 2 years ago
- ☆20Oct 4, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Gene Expression Decomposition and Integration☆21Feb 9, 2026Updated 8 months ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆134Aug 3, 2026Updated 2 months ago
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆262Mar 14, 2026Updated 6 months ago
- MaveDB API☆18Updated this week
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆37Apr 2, 2025Updated last year
- Code for the analysis performed in the paper "Transcription factor stoichiometry, motif affinity and syntax regulate single-cell chromati…☆17Oct 16, 2025Updated 11 months ago
- ☆22Jun 11, 2026Updated 3 months ago