Genentech / decimaLinks
Decima is a Python library to train sequence models on single-cell RNA-seq data.
☆50Updated last week
Alternatives and similar repositories for decima
Users that are interested in decima are comparing it to the libraries listed below
Sorting:
- ☆56Updated 5 months ago
- ☆24Updated last year
- CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets☆116Updated this week
- Pipeline to run scE2G☆30Updated 3 weeks ago
- A method for analyzing scATAC-seq experiments.☆34Updated 4 months ago
- CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…☆51Updated last week
- CZ CELLxGENE Discover Census☆113Updated last week
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆56Updated last week
- This repository hosts a minimal version of a Python API for BPNet.☆52Updated 3 weeks ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆82Updated last month
- Single cell omics biology annotations☆50Updated 6 months ago
- code to run EPInformer for gene expression prediction and gene-enhancer link prediction☆43Updated last month
- Geometry-preserving random sampling☆93Updated last year
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆50Updated 9 months ago
- Dataloader for applying sequence models to personalized genomics☆27Updated this week
- pseudobulking on an AnnData object☆34Updated 8 months ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆32Updated last month
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆56Updated last year
- ☆61Updated last year
- Formalizing and benchmarking open problems in single-cell genomics☆57Updated 5 months ago
- Toolset for training quantitative sequence to function models.☆23Updated last year
- ☆45Updated last week
- Python implementation of the Slingshot pseudotime algorithm☆66Updated 2 weeks ago
- Unified knowledge-driven network inference from omics data☆85Updated 3 weeks ago
- ☆37Updated last week
- Multimodal Data (.h5mu) implementation for Python☆98Updated 2 weeks ago
- A python package for chromVAR☆31Updated 2 years ago
- software to detect doublets☆95Updated 10 months ago
- ☆44Updated last year
- ☆26Updated 5 months ago