altoslabs / perturbenchLinks
☆28Updated last month
Alternatives and similar repositories for perturbench
Users that are interested in perturbench are comparing it to the libraries listed below
Sorting:
- ☆23Updated last month
- repository containing analysis scripts and auxiliary files☆34Updated 5 years ago
- ACTIONet single-cell analysis framework☆41Updated 9 months ago
- scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism☆14Updated 8 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆63Updated last year
- Tools for sgRNA calling in direct capture Perturb-seq data☆34Updated 2 years ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆48Updated 5 months ago
- Single cell omics biology annotations☆51Updated 2 months ago
- code to run EPInformer for gene expression prediction and gene-enhancer links prioritization☆43Updated 7 months ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- ☆59Updated 9 months ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆38Updated this week
- Benchmark of GRNs using the GRETA pipeline☆24Updated 3 months ago
- Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"☆53Updated 5 years ago
- single cell foundation model for Gene network inference and more☆17Updated this week
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆25Updated 2 years ago
- ☆33Updated last month
- Molecular interactions inference from single-cell multi-omics data☆25Updated 2 weeks ago
- ☆27Updated last week
- cTPnet Package☆25Updated 2 years ago
- ☆53Updated 7 months ago
- ☆10Updated last month
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆59Updated this week
- ☆28Updated 4 years ago
- ☆25Updated last month
- ☆54Updated last month
- Additional code and analysis from the single-cell integration benchmarking project☆67Updated 2 years ago
- Modeling complex perturbations with CellFlow☆57Updated this week
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 5 months ago
- ☆43Updated last year