☆96Aug 10, 2026Updated 3 weeks ago
Alternatives and similar repositories for perturbench
Users that are interested in perturbench are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16Dec 18, 2024Updated last year
- Single-cell perturbation effects prediction benchmark☆103May 6, 2026Updated 3 months ago
- single-cell latent diffusion model☆63Updated this week
- Single-Cell (Perturbation) Model Library☆128Jul 27, 2026Updated last month
- ☆95Jul 18, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Single-cell perturbation analysis☆339Updated this week
- Regulatory Temporal Interaction Network Inference☆16Mar 11, 2026Updated 5 months ago
- ☆18Oct 22, 2025Updated 10 months ago
- ☆19May 23, 2025Updated last year
- Modeling complex perturbations with CellFlow☆159Updated this week
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆150Aug 14, 2024Updated 2 years ago
- Code for "Foundation Models Improve Perturbation Response Prediction"☆29Apr 16, 2026Updated 4 months ago
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆404Feb 1, 2025Updated last year
- ☆72Jan 14, 2026Updated 7 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆66Jan 12, 2026Updated 7 months ago
- ☆53Jun 16, 2025Updated last year
- ☆18Apr 23, 2026Updated 4 months ago
- ☆184Jan 30, 2026Updated 7 months ago
- State is a machine learning model that predicts cellular perturbation response across diverse contexts☆666Jul 24, 2026Updated last month
- Sample representation benchmark for single-cell data☆13Jun 12, 2026Updated 2 months ago
- Comprehensive suite for evaluating perturbation prediction models☆155Jul 27, 2026Updated last month
- A benchmark on predicting how small molecules change gene expression in different cell types.☆18Jul 4, 2025Updated last year
- cz-benchmarks is a package for standardized evaluation and comparison of machine learning models for biological applications.☆56Dec 19, 2025Updated 8 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Arc Virtual Cell Atlas☆586Aug 28, 2026Updated last week
- A repository for reproducing experiments from the TxPert paper☆48Mar 25, 2026Updated 5 months ago
- ☆17Jan 30, 2026Updated 7 months ago
- ☆30Oct 14, 2024Updated last year
- ☆53Sep 23, 2025Updated 11 months ago
- Distributed single-cell data analysis.☆40Updated this week
- 🏃 The go-to single-cell Foundation Model☆157Aug 11, 2026Updated 3 weeks ago
- ☆69Jun 11, 2025Updated last year
- pytorch dataloaders for single-cell perturbation data☆51Jul 18, 2026Updated last month
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆29Nov 25, 2024Updated last year
- physics-informed neural network based method for solving single-cell population dynamics☆17Jun 23, 2026Updated 2 months ago
- scDFM: Distributional Flow Matching for Robust Single-Cell Perturbation Prediction (ICLR 2026)☆55Apr 22, 2026Updated 4 months ago
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆41Jul 29, 2025Updated last year
- Group-wise release of ProtiCelli, including core code deveplopment.☆26Aug 29, 2026Updated last week
- BioDiscoveryAgent is an LLM-based AI agent for closed-loop design of genetic perturbation experiments☆125Jul 6, 2025Updated last year
- ☆71Jul 21, 2023Updated 3 years ago