altoslabs / perturbench
☆25Updated 3 months ago
Alternatives and similar repositories for perturbench:
Users that are interested in perturbench are comparing it to the libraries listed below
- scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism☆13Updated 5 months ago
- ACTIONet single-cell analysis framework☆38Updated 6 months ago
- cTPnet Package☆25Updated 2 years ago
- Knowledge-primed neural networks☆36Updated 2 years ago
- ☆24Updated 2 months ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆32Updated last year
- repository containing analysis scripts and auxiliary files☆33Updated 5 years ago
- Benchmark of GRNs using the GRETA pipeline☆23Updated 3 weeks ago
- Spatial reconstruction of dissociated single-cell data☆17Updated last year
- Single Cell Consensus Clustering with Speed☆21Updated 2 years ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆29Updated last week
- ☆30Updated last week
- Molecular interactions inference from single-cell multi-omics data☆22Updated 5 months ago
- code to run EPInformer for gene expression prediction and gene-enhancer links prioritization☆38Updated 4 months ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆25Updated 2 years ago
- ☆19Updated 2 months ago
- ☆14Updated 2 years ago
- Single cell omics biology annotations☆51Updated last month
- ☆25Updated 3 months ago
- ☆57Updated 7 months ago
- Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.☆18Updated last week
- ☆51Updated last week
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆61Updated 11 months ago
- Diffusion model for gene regulatory network inference.☆17Updated 2 weeks ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆49Updated 3 years ago
- Gene group activity utility functions for Scanpy☆71Updated 3 months ago
- Code for scKINETICS (ISMB 2023)☆21Updated last year
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆31Updated last week
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆46Updated this week
- single cell foundation model for Gene network inference and more☆16Updated 6 months ago