Data-driven design of context-specific regulatory elements
☆10Jun 18, 2024Updated 2 years ago
Alternatives and similar repositories for SynthSeqs
Users that are interested in SynthSeqs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10Aug 28, 2025Updated last year
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆49Mar 26, 2025Updated last year
- A Large-Scale Dataset and Framework for Genomic Foundation Model Benchmarking☆33Sep 1, 2026Updated last month
- "Global Importance Analysis: A Method to Quantify Importance of Genomic Features in Deep Neural Networks" by Koo et al.☆15Jun 22, 2022Updated 4 years ago
- Repository for "NucleoBench: A Large-Scale Benchmark of Neural Nucleic Acid Design Algorithms"☆27Sep 14, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Chromatin contact paired-read single-cell Hi-C processing module for Nuc3D and NucTools☆15Sep 28, 2026Updated 2 weeks ago
- A Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.☆29Aug 15, 2026Updated 2 months ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆36Jan 4, 2022Updated 4 years ago
- ☆18Jan 24, 2018Updated 8 years ago
- Python-based UCSC genome browser snapshot-taker and gallery-maker☆12May 21, 2024Updated 2 years ago
- ☆29Dec 15, 2021Updated 4 years ago
- ☆13Oct 7, 2026Updated last week
- Quick pre-QC knee plots for barcode based scRNAseq data☆13Dec 8, 2018Updated 7 years ago
- An example of how I write/publish libraries for node/browsers with npm☆14Jul 19, 2017Updated 9 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆84Sep 3, 2024Updated 2 years ago
- Evaluating genomic sequence models for explaining personalized expression variation☆20Dec 6, 2023Updated 2 years ago
- Mean Alterations Using Discrete Expression☆14Apr 9, 2024Updated 2 years ago
- ☆12May 13, 2025Updated last year
- Documentations and Tutorials of Gosling.js☆12Sep 13, 2021Updated 5 years ago
- 机器学习(Machine Learning)、深度学习(Deep Learning)、对抗神经网络(GAN），图神经网络（GNN），NLP，大数据相关的发展路书(roadmap), 并附海量源码（python，pytorch）带大家消化基本知识点，突破面试，完成从新手到合格…☆10Feb 25, 2020Updated 6 years ago
- Tools for handling HiC and 5C data☆24Feb 5, 2024Updated 2 years ago
- Implementation of the algorithm detailed in paper "Evolutionary design of molecules based on deep learning and a genetic algorithm"☆24Dec 15, 2023Updated 2 years ago
- ☆13Apr 23, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Simple SVG box plots in React☆12Mar 7, 2023Updated 3 years ago
- iDeepV: predicting RBP binding sites using vector representation learned from sequences with a CNN.☆10Jul 16, 2019Updated 7 years ago
- 3D Genome Browser☆32Jan 22, 2022Updated 4 years ago
- US Health and Human Services scientific funding visualizations☆17Updated this week
- convert from HDF5 matrix format to txt/tab (tsv) matrix format☆10Aug 3, 2016Updated 10 years ago
- ☆28Dec 3, 2025Updated 10 months ago
- Annotated sequence data☆11Feb 2, 2025Updated last year
- Genomic sequence preprocessing toolkit☆14Sep 26, 2026Updated 3 weeks ago
- ScoMAP is an R package to spatially integrate single-cell omics data into virtual cells and infer enhancer-to-gene relationships.☆30Oct 4, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Slides and demos from our SciPyConf 2019 talk☆13Sep 28, 2021Updated 5 years ago
- MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect☆31May 11, 2026Updated 5 months ago
- Sanger Cellular Genetics single-cell ATAC-seq pipeline.☆13Aug 25, 2023Updated 3 years ago
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆12Nov 15, 2024Updated last year
- scPair: Boosting single cell multimodal analysis by leveraging single cell atlases and implicit feature selection☆13Sep 8, 2025Updated last year
- Flexible workflow designed for bacterial WGS analyses (annotation, core/pan-genome reconstruction, phylogeny)☆12Aug 6, 2023Updated 3 years ago
- Machine learning framework to quantify pathogenicity of structural variants☆12Dec 3, 2020Updated 5 years ago