NuttyLogic / BSBoltLinks
BiSulfite Bolt - A Bisulfite Sequencing Alignment and Processing Tool
☆23Updated 2 years ago
Alternatives and similar repositories for BSBolt
Users that are interested in BSBolt are comparing it to the libraries listed below
Sorting:
- Identify and annotate TE-mediated insertions in long-read sequence data☆44Updated 3 months ago
- Long read to rMATS☆32Updated 2 years ago
- ☆20Updated 3 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- ☆23Updated 10 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated last year
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆48Updated 2 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 8 years ago
- Evolutionary Transcriptomics with R☆46Updated 2 weeks ago
- R package to easily generate "V-plots" of paired-end sequencing data over regions of interest☆11Updated last year
- A software for calculating telomere length☆72Updated 7 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated last month
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 6 months ago
- ☆38Updated 2 years ago
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆24Updated 3 years ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆67Updated last month
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- Long-read splice alignment with high accuracy☆63Updated last year
- Long-read Isoform Quantification and Analysis☆38Updated 7 months ago
- Pipeline for structural variation detection in cohorts☆52Updated 4 years ago
- ENCODE long read RNA-seq pipeline☆51Updated 2 years ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated last year
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆27Updated 6 years ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆25Updated 3 weeks ago
- Tools for processing and analyzing structural variants.☆33Updated 10 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated last year
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 5 months ago
- Immuological gene typing and annotation for genome assembly☆38Updated 7 months ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆36Updated 2 years ago