This repository contains teaching material for the 3rd International Summer School on Non-Targeted Metabolomics Data Mining for Biomedical Research
☆12Aug 25, 2023Updated 2 years ago
Alternatives and similar repositories for CD-MRG-metabolomics_summerschool_2023
Users that are interested in CD-MRG-metabolomics_summerschool_2023 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- FBMN-STATS: A hitchhiker's guide to statistical analysis of Feature-based Molecular Networks☆47Jun 23, 2025Updated 9 months ago
- Untargeted metabolomics workflow for data processing and analysis written in Jupyter notebooks (Python)☆24Nov 11, 2024Updated last year
- This repository contains training data for retention time prediction for the identification of metabolites from non-targeted LC-MS based …☆60Mar 27, 2026Updated 3 weeks ago
- Python pipeline for metabolomics data preprocessing, QC, standardization and annotation☆16Mar 26, 2026Updated 3 weeks ago
- Bioactive Molecular Networks Project☆16Nov 17, 2020Updated 5 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Tools for treatment high res mass spectrum of natural organic matter samples☆11Aug 4, 2023Updated 2 years ago
- ☆11Mar 31, 2026Updated 2 weeks ago
- A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery☆51Aug 28, 2023Updated 2 years ago
- ☆16Jul 20, 2022Updated 3 years ago
- a *biosynformatic* fingerprint to explore natural product distance and diversity☆22Aug 30, 2025Updated 7 months ago
- Workflow solutions for mass-spectrometry based non-target analysis.☆70Updated this week
- Public Workflows at GNPS☆65Jan 30, 2024Updated 2 years ago
- DLNA addon for your self-hosted Nextcloud app instance that allows you to stream Nextcloud users content on client devices in your networ…☆12Mar 8, 2026Updated last month
- Metabolomics software for database-assisted deconvolution of MS/MS spectra☆19Jan 24, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Teaching materials for SymbNET course: from MAGs to GEMs☆14Jan 8, 2024Updated 2 years ago
- Interactive software to analyze and browse mass spectrometry data☆21Jul 3, 2025Updated 9 months ago
- GLEAMS is a Learned Embedding for Annotating Mass Spectra.☆28Aug 16, 2023Updated 2 years ago
- Analysis and benchmarking of mass spectra similarity measures using gnps data set.☆24Aug 13, 2021Updated 4 years ago
- Standardized and Automated MetaBarcoding Analyses workflow (Mirror)☆13Jun 28, 2023Updated 2 years ago
- Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.☆24Jun 3, 2025Updated 10 months ago
- Data, scripts, and lectures for the Introduction to Metagenomics Summer Workshop 2019.☆36Jul 15, 2019Updated 6 years ago
- ☆11Mar 10, 2024Updated 2 years ago
- SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository…☆145Apr 2, 2026Updated 2 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Repo for a Microbiome Protocol☆10Apr 26, 2018Updated 7 years ago
- Integrated Machine Learning for Multi-omics Classification and Prediction☆28Apr 5, 2026Updated 2 weeks ago
- ☆25Updated this week
- Reaction Analysis through Imaging of Chemical Units☆16Dec 5, 2025Updated 4 months ago
- GitKraken lesson (forked from HBS-RCS)☆10Mar 20, 2026Updated 3 weeks ago
- Dashboard for analysis of liquid chromatography (tandem) mass spectrometry data.☆33Jan 29, 2026Updated 2 months ago
- ☆72Aug 21, 2024Updated last year
- University of Cambridge PhD thesis☆16Jan 8, 2021Updated 5 years ago
- A taxonomic classifier for shotgun metagenomics reads☆11Apr 4, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆15Mar 14, 2023Updated 3 years ago
- A bioinformatic tool facilitating automated in-source fragmentation identification☆10Sep 6, 2022Updated 3 years ago
- Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.☆28May 25, 2023Updated 2 years ago
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆31Jan 5, 2025Updated last year
- A bacterial GWAS pipeline written in Nextflow that uses Pyseer; Part III Project for Systems Biology at the University of Cambridge☆21Jan 20, 2026Updated 2 months ago
- Software to trim the ITS region of FASTQ sequences for amplicon sequencing analysis☆17Mar 26, 2025Updated last year
- NeatMS is an open source python package for untargeted LCMS signal labelling and filtering.☆34Aug 19, 2021Updated 4 years ago