debbiemarkslab / MuELinks
A package for making MuE observation models in Edward2.
☆13Updated 4 years ago
Alternatives and similar repositories for MuE
Users that are interested in MuE are comparing it to the libraries listed below
Sorting:
- GraphPart, a data partitioning method for ML on biological sequences☆29Updated last year
- A Python package for gene network analysis☆32Updated 3 years ago
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆39Updated 2 months ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆50Updated 6 years ago
- Fully convolutional deep learning variant effect predictor architecture☆23Updated last year
- Genomic sequence preprocessing toolkit☆12Updated last week
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year
- 🧛 Deep generative models for TCR sequences 🧛☆17Updated 3 years ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆67Updated 2 years ago
- ☆18Updated last year
- Promoter activity measurement and modeling; artificial promoter design and testing☆12Updated 2 years ago
- Deep learning model to predict degron sequences☆19Updated 2 years ago
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆48Updated last year
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆30Updated 2 years ago
- Methods for mapping genomic data onto 3D protein structure.☆28Updated 3 years ago
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019☆17Updated 6 years ago
- Scripts for building computational models of gene regulation with tensorflow☆27Updated 2 years ago
- Infer selection pressures on features of amino acid CDR3 sequences.☆25Updated last year
- Code for the analyses in the human reference interactome paper.☆27Updated 2 years ago
- Fast Inference of Networks from Directed Regulations☆22Updated last year
- ☆16Updated 2 weeks ago
- Diverse Genomic Embedding Benchmark☆46Updated 5 months ago
- ☆38Updated last year
- Jax code for functional genomics ML☆14Updated 5 months ago
- Variational Auto Encoders for learning binding signatures of transcription factors☆12Updated last year
- Python package to plot sequence logos☆29Updated last year
- Bioinformatics 2020: FastSK: Fast and Accurate Sequence Classification by making gkm-svm faster and scalable. https://fastsk.readthedocs.…☆21Updated 2 years ago
- We present Envision, an accurate predictor of protein variant molecular effect, trained using large-scale experimental mutagenesis data. …☆17Updated 7 years ago
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆35Updated 5 months ago