debbiemarkslab / MuE

Related projects ⓘ

Alternatives and complementary repositories for MuE

• stracquadaniolab / pygna
  A Python package for gene network analysis
  ☆32Updated 2 years ago
• johli / scrambler
  Interpretation by Deep Generative Masking for Biological Sequences
  ☆36Updated 2 years ago
• matsengrp / sumrep
  Summary statistics for repertoires
  ☆16Updated last year
• fanzheng10 / HiDeF
  HiDeF (Hierarchical community Decoding Framework)
  ☆13Updated 9 months ago
• lingfeiwang / findr
  Fast Inference of Networks from Directed Regulations
  ☆21Updated 11 months ago
• allydunham / aa_subtypes
  Code for the MSB publication: Exploring amino acid functions and positional subtypes in a deep mutational landscape
  ☆11Updated 2 years ago
• TattaBio / DGEB
  Diverse Genomic Embedding Benchmark
  ☆37Updated last month
• autosome-ru / LegNet
  accurate prediction of promoter activity and variant effects from massive parallel reporter assays
  ☆29Updated 3 weeks ago
• ML4GLand / SeqData
  Annotated sequence data
  ☆11Updated 2 weeks ago
• de-Boer-Lab / CisRegModels
  Scripts for building computational models of gene regulation with tensorflow
  ☆27Updated last year
• kundajelab / coessentiality
  Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)
  ☆27Updated 2 years ago
• jbkinney / mavenn
  MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect
  ☆24Updated 5 months ago
• goodarzilab / SwitchFinder
  ☆14Updated 4 months ago
• ekernf01 / perturbation_benchmarking
  Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.
  ☆17Updated this week
• sbl-sdsc / mmtf-genomics
  Methods for mapping genomic data onto 3D protein structure.
  ☆28Updated 2 years ago
• debbiemarkslab / variational-synthesis
  Repository for the paper "Optimal design of stochastic DNA synthesis protocols based on generative sequence models" (Weinstein et al., AI…
  ☆28Updated 2 years ago
• DennisGankin / species-aware-DNA-LM
  Species-aware DNA language modeling
  ☆17Updated last year
• maxwellsh / DIGDriver
  Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.
  ☆24Updated 2 years ago
• VariantEffect / mavetools
  Useful functions for manipulating Multiplex Assay of Variant Effect datasets.
  ☆10Updated 6 months ago
• FunctionLab / tapioca
  a framework for predicting global protein-protein interaction networks from dynamic mass spec data
  ☆23Updated 8 months ago
• jbloomlab / dmslogo
  draw sequence logos tailored to deep mutational scanning (DMS) data
  ☆12Updated last year
• songlab-cal / CPT
  Cross-protein transfer learning for variant effect prediction
  ☆17Updated last year
• VariantEffect / MaveReferences
  Table of Multiplexed Assay of Variant Effect (MAVE) studies
  ☆11Updated last year
• Genentech / polygraph
  Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …
  ☆27Updated this week
• pjsample / human_5utr_modeling
  Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.
  ☆43Updated 5 years ago
• GreiffLab / immuneSIM
  ☆38Updated 11 months ago
• smolkelab / promoter_design
  Promoter activity measurement and modeling; artificial promoter design and testing
  ☆12Updated last year
• shtoneyan / gopher
  Toolset for training quantitative sequence to function models.
  ☆20Updated 8 months ago
• marcottelab / protein_complex_maps
  Kdrew's scripts for handling protein complex map data
  ☆14Updated 11 months ago
• johli / seqprop
  Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor
  ☆42Updated 3 months ago