Alternatives and similar repositories for cucim

Users that are interested in cucim are comparing it to the libraries listed below

• seung-lab / connected-components-3d
  Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries …
  ☆427Updated last week
• nvidia-holoscan / holoscan-sdk
  The AI sensor processing SDK for low latency streaming workflows
  ☆173Updated last week
• girder / large_image
  Python modules to work with large multiresolution images.
  ☆214Updated this week
• Bayer-Group / tiffslide
  TiffSlide - cloud native openslide-python replacement based on tifffile
  ☆103Updated 4 months ago
• InsightSoftwareConsortium / itkwidgets
  An elegant Python interface for visualization on the web platform to interactively generate insights into multidimensional images, point …
  ☆613Updated 6 months ago
• mlcommons / GaNDLF
  A generalizable application framework for segmentation, regression, and classification using PyTorch
  ☆186Updated last month
• jni / skan
  Python module to analyse skeleton (thin object) images
  ☆135Updated last week
• cgohlke / tifffile
  Read and write TIFF files.
  ☆632Updated this week
• MIC-DKFZ / napari-sam
  ☆240Updated last year
• InsightSoftwareConsortium / ITKElastix
  An ITK Python interface to elastix, a toolbox for rigid and nonrigid registration of images
  ☆255Updated 3 weeks ago
• slideflow / slideflow
  Powerful, open-source AI tools for digital pathology.
  ☆330Updated 2 weeks ago
• TissueImageAnalytics / tiatoolbox
  Computational Pathology Toolbox developed by TIA Centre, University of Warwick.
  ☆470Updated last week
• clEsperanto / pyclesperanto_prototype
  GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data
  ☆232Updated 7 months ago
• seung-lab / kimimaro
  Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)
  ☆170Updated last week
• Project-MONAI / MetricsReloaded
  ☆91Updated 4 months ago
• seung-lab / fastremap
  Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.
  ☆63Updated last week
• google-deepmind / surface-distance
  Library to compute surface distance based performance metrics for segmentation tasks.
  ☆578Updated 7 months ago
• DigitalSlideArchive / HistomicsTK
  A Python toolkit for pathology image analysis algorithms.
  ☆449Updated last week
• ZFTurbo / volumentations
  Library for 3D augmentations
  ☆256Updated 11 months ago
• seung-lab / euclidean-distance-transform-3d
  Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.
  ☆256Updated 7 months ago
• Project-MONAI / MONAILabel
  MONAI Label is an intelligent open source image labeling and learning tool.
  ☆760Updated this week
• mhe / pynrrd
  Simple pure-python module for reading and writing nrrd files.
  ☆122Updated 8 months ago
• gvtulder / elasticdeform
  Differentiable elastic deformations for N-dimensional images (Python, SciPy, NumPy, TensorFlow, PyTorch).
  ☆192Updated 7 months ago
• NVIDIA / ai-assisted-annotation-client
  Client side integration example source code and libraries for AI-Assisted Annotation SDK
  ☆320Updated last year
• fepegar / awesome-medical-imaging
  Awesome list of software that I use to do research in medical imaging.
  ☆231Updated 5 years ago
• lassoan / slicerio
  Utilities for reading and writing files created by 3D Slicer
  ☆41Updated 8 months ago
• Project-MONAI / MONAIBootcamp2020
  Material for the 2020 MONAI Bootcamp
  ☆64Updated 4 years ago
• Project-MONAI / model-zoo
  MONAI Model Zoo that hosts models in the MONAI Bundle format.
  ☆251Updated this week
• Slicer / SlicerJupyter
  Extension for 3D Slicer that allows the application to be used from Jupyter notebook
  ☆256Updated last year
• NVIDIA / clara-viz
  NVIDIA Clara Viz is a platform for visualization of 2D/3D medical imaging data
  ☆72Updated last month