Alternatives and similar repositories for cucim

Users that are interested in cucim are comparing it to the libraries listed below

• MIC-DKFZ / napari-sam
  ☆233Updated last year
• seung-lab / connected-components-3d
  Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries …
  ☆417Updated 2 months ago
• Bayer-Group / tiffslide
  TiffSlide - cloud native openslide-python replacement based on tifffile
  ☆103Updated this week
• google-deepmind / surface-distance
  Library to compute surface distance based performance metrics for segmentation tasks.
  ☆564Updated 3 months ago
• dask / dask-image
  Distributed image processing
  ☆220Updated 2 weeks ago
• jni / skan
  Python module to analyse skeleton (thin object) images
  ☆123Updated last month
• Project-MONAI / monai-deploy-app-sdk
  MONAI Deploy App SDK offers a framework and associated tools to design, develop and verify AI-driven applications in the healthcare imagi…
  ☆104Updated last month
• clEsperanto / pyclesperanto_prototype
  GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data
  ☆226Updated 3 months ago
• nvidia-holoscan / holoscan-sdk
  The AI sensor processing SDK for low latency streaming workflows
  ☆149Updated this week
• InsightSoftwareConsortium / ITKElastix
  An ITK Python interface to elastix, a toolbox for rigid and nonrigid registration of images
  ☆238Updated last week
• seung-lab / fastremap
  Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.
  ☆56Updated this week
• frankkramer-lab / miseval
  a metric library for Medical Image Segmentation EVALuation
  ☆116Updated 7 months ago
• InsightSoftwareConsortium / itkwidgets
  An elegant Python interface for visualization on the web platform to interactively generate insights into multidimensional images, point …
  ☆602Updated 2 months ago
• girder / large_image
  Python modules to work with large multiresolution images.
  ☆205Updated this week
• Project-MONAI / MONAILabel
  MONAI Label is an intelligent open source image labeling and learning tool.
  ☆718Updated 3 weeks ago
• seung-lab / kimimaro
  Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)
  ☆152Updated 2 weeks ago
• mlcommons / GaNDLF
  A generalizable application framework for segmentation, regression, and classification using PyTorch
  ☆177Updated 3 weeks ago
• Project-MONAI / VISTA
  MONAI Versatile Imaging Segmentation and Annotation
  ☆193Updated 3 weeks ago
• cgohlke / tifffile
  Read and write TIFF files.
  ☆602Updated this week
• dovahcrow / patchify.py
  A library that helps you split image into small, overlappable patches, and merge patches into original image.
  ☆225Updated 11 months ago
• Project-MONAI / model-zoo
  MONAI Model Zoo that hosts models in the MONAI Bundle format.
  ☆236Updated this week
• nvidia-holoscan / holohub
  Central repository for Holoscan Reference Applications
  ☆138Updated this week
• DigitalSlideArchive / HistomicsTK
  A Python toolkit for pathology image analysis algorithms.
  ☆421Updated this week
• the-lay / tiler
  N-dimensional NumPy array tiling and merging with overlapping, padding and tapering
  ☆70Updated last year
• ome / ome-zarr-py
  Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
  ☆193Updated last week
• smistad / FAST
  A framework for high-performance medical image processing, neural network inference and visualization
  ☆468Updated this week
• ZFTurbo / volumentations
  Library for 3D augmentations
  ☆249Updated 7 months ago
• airlab-unibas / airlab
  Image registration laboratory for 2D and 3D image data
  ☆425Updated 4 years ago
• CAREamics / careamics
  A deep-learning library for denoising images using Noise2Void and friends (CARE, PN2V, HDN etc.), with a focus on user-experience and doc…
  ☆88Updated this week
• seung-lab / cloud-volume
  Read and write Neuroglancer datasets programmatically.
  ☆153Updated this week