DIAGNijmegen / pathology-artifact-detection
Quality control of whole-slide images through multi-class semantic segmentation of artifacts
☆27Updated 7 months ago
Related projects: ⓘ
- Pipeline for computational pathology☆31Updated 8 months ago
- H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.☆52Updated last year
- Python 3 library for the augmentation & normalization of H&E images☆50Updated 2 years ago
- Interpretable Gland-Graph Networks☆19Updated 6 months ago
- A tool for rapidly labeling objects using deep learning feature embedding☆26Updated last month
- GPU-accelerated stain normalization command line tool☆19Updated 11 months ago
- A Python package for handling histopathology whole-slide images using multiple instance learning (MIL) techniques.☆26Updated 3 months ago
- Solid Tumor Associative Modeling in Pathology☆29Updated last month
- NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation☆45Updated 2 years ago
- ☆43Updated last year
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆56Updated 2 months ago
- ☆51Updated 5 months ago
- Toolbox for measuring adversarial robustness to many transforms☆19Updated last year
- List of pathology feature extractors☆32Updated this week
- Whole Slide image (WSI) conversion for brightfield histology images☆31Updated last month
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆91Updated last week
- Coincides with blogpost for using geojson and shapely☆28Updated 3 years ago
- 🔬 Code-free deep segmentation for computational pathology☆50Updated 3 months ago
- An open-source digital pathology based rapid image annotation tool☆74Updated 5 months ago
- Deep learning enabled assessment of cardiac allograft rejection from endomyocardial biopsies- Nature Medicine☆28Updated 2 years ago
- Histopathology Image Analysis☆89Updated last year
- Histology Self-Supervised Learning☆10Updated 2 years ago
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)☆64Updated 7 months ago
- ☆49Updated 2 years ago
- ☆38Updated 2 years ago
- A tutorial demonstration of pathml on an example dataset for the manuscript "PathML: A unified framework for WSI analysis with deep learn…☆21Updated 2 years ago
- A Python library for deep learning on whole-slide images☆47Updated 2 years ago
- Blazing fast nuclei segmentation for brightfield Whole Slide Images☆27Updated last month
- Preprocessing module for large histological images☆18Updated last year
- Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Qu…☆37Updated 2 months ago