jamesdolezal / biscuitView external linksLinks
Bayesian Inference of Slide-level Confidence via Uncertainty Index Thresholding
☆30Sep 6, 2024Updated last year
Alternatives and similar repositories for biscuit
Users that are interested in biscuit are comparing it to the libraries listed below
Sorting:
- Synthetic histology using GANs, for deep learning model explainability and trainee education.☆16Jan 5, 2024Updated 2 years ago
- ECCV-AIMIA 2022 paper: "Multi-Scale Attention-based Multiple Instance Learning for Classification of Multi-Gigapixel Histology Images"☆13Apr 8, 2023Updated 2 years ago
- Quality control of whole-slide images through multi-class semantic segmentation of artifacts☆38Jan 25, 2024Updated 2 years ago
- Powerful, open-source AI tools for digital pathology.☆351Nov 13, 2025Updated 3 months ago
- H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.☆57Jun 20, 2023Updated 2 years ago
- ☆46Jan 10, 2022Updated 4 years ago
- ☆43Jul 18, 2022Updated 3 years ago
- Code for the paper "Model Agnostic Interpretability for Multiple Instance Learning".☆13Jan 28, 2022Updated 4 years ago
- CBMIL: Clustering-based Multi-instance Learning Network for Whole Slide Image Classification☆11Mar 5, 2023Updated 2 years ago
- Variance pooling to incorporate ITH in CPath models - MICCAI 2022☆26Sep 27, 2022Updated 3 years ago
- A tool for training machine-learning models with whole-slide imaging datasets☆26Dec 27, 2023Updated 2 years ago
- Open source whole slide image preparation and viewing pipeline☆13Mar 16, 2020Updated 5 years ago
- A Girder plugin for pathology image annotations and analysis.☆79Updated this week
- Official implementation of "ScoreNet: Learning Non-Uniform Attention and Augmentation for Transformer-Based Histopathological Image Class…☆12Mar 6, 2023Updated 2 years ago
- Python 3 library for the augmentation & normalization of H&E images☆64Sep 12, 2022Updated 3 years ago
- ☆56Apr 14, 2025Updated 10 months ago
- Histopathology Image Analysis☆93Jul 6, 2023Updated 2 years ago
- Dataset of 9536 H&E-stained patches for colorectal polyps classification and adenomas grading | ICIP21 https://doi.org/10.1109/ICIP42928.…☆34May 18, 2023Updated 2 years ago
- Ahcore is the AI for Oncology core computational pathology toolkit☆16Oct 3, 2024Updated last year
- ⚡ Open-source software for deep learning-based digital pathology☆141Jun 14, 2024Updated last year
- convert .kfb format whole slide images to .svs format image for further processing☆16Sep 19, 2020Updated 5 years ago
- A Girder plugin for exposing slicer execution model's CLI modules over the web☆18Sep 16, 2025Updated 4 months ago
- GPU-accelerated image processing in QuPath☆16Oct 23, 2021Updated 4 years ago
- MICCAI2020. "Multiple Instance Learning with Center Embeddings for Histopathology Image Classification"☆38Jan 22, 2021Updated 5 years ago
- It will be the supporting scripts for tct project.☆17Oct 10, 2022Updated 3 years ago
- Official code for the paper "A Good Feature Extractor Is All You Need for Weakly Supervised Pathology Slide Classification"☆18Aug 17, 2024Updated last year
- a toolbox for manipulation of digital pathology slides and annotations☆19Aug 11, 2020Updated 5 years ago
- Histopathology Slides Preprocessing Pipeline☆43Updated this week
- Awesome Domain Generalization for Computational Pathology☆23Nov 7, 2024Updated last year
- Code related to the PANDA challenge on artificial intelligence for Gleason grading☆18Oct 22, 2021Updated 4 years ago
- A biologically interpretable integrative deep learning model that integrates PAthological images and GEnomic data☆18Jun 22, 2020Updated 5 years ago
- Use streaming to train whole-slides images with single image-level labels, by reducing GPU memory requirements with 99%.☆78Jan 9, 2023Updated 3 years ago
- The official deployment of the Digital Slide Archive and HistomicsTK.☆133Updated this week
- ☆17Aug 8, 2022Updated 3 years ago
- GPU-accelerated stain normalization command line tool☆24Oct 19, 2023Updated 2 years ago
- Divide-and-Rule: Self-Supervised Learning for Survival Analysis in Colorectal Cancer☆21May 14, 2024Updated last year
- Solid Tumor Associative Modeling in Pathology☆110Updated this week
- Fusing Histology and Genomics via Deep Learning - IEEE TMI☆331Aug 22, 2022Updated 3 years ago
- A whole-slide image reader for TensorFlow☆24Nov 24, 2025Updated 2 months ago