Alternatives and similar repositories for biscuit:

Users that are interested in biscuit are comparing it to the libraries listed below

• andreped / fast-stain-normalization
  GPU-accelerated stain normalization command line tool
  ☆19Updated last year
• DIAGNijmegen / pathology-he-auto-augment
  H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.
  ☆52Updated last year
• mahmoodlab / CRANE
  Deep learning enabled assessment of cardiac allograft rejection from endomyocardial biopsies- Nature Medicine
  ☆28Updated 2 years ago
• mahmoodlab / varpool
  Variance pooling to incorporate ITH in CPath models - MICCAI 2022
  ☆23Updated 2 years ago
• alexjfoote / reetoolbox
  Toolbox for measuring adversarial robustness to many transforms
  ☆19Updated 2 years ago
• georg-wolflein / good-features
  Official code for the paper "A Good Feature Extractor Is All You Need for Weakly Supervised Pathology Slide Classification"
  ☆17Updated 5 months ago
• secrierlab / HistoMIL
  A Python package for handling histopathology whole-slide images using multiple instance learning (MIL) techniques.
  ☆28Updated 8 months ago
• KatherLab / preProcessing
  ☆43Updated last year
• mdsatria / MultiAttentionMIL
  ECCV-AIMIA 2022 paper: "Multi-Scale Attention-based Multiple Instance Learning for Classification of Multi-Gigapixel Histology Images"
  ☆12Updated last year
• MarvinLer / SparseConvMIL
  Sparse Convolutional Context-Aware Multiple Instance Learning for Whole Slide Image Classification | https://arxiv.org/abs/2105.02726
  ☆26Updated 3 years ago
• histocartography / seg-gini
  SEGmentation using Graphs with Inexact aNd Incomplete labels
  ☆22Updated 2 years ago
• jopo666 / HistoPrep
  Preprocessing module for large histological images
  ☆19Updated last year
• superhy / LCSB-MIL
  source code of Inter-MIL: self-interactive multi-instance learning
  ☆10Updated last year
• christianabbet / SRA
  ☆14Updated 7 months ago
• vqdang / H2T
  ☆36Updated last year
• wenqi006 / SlideGraph
  ☆52Updated 3 years ago
• sophiajw / HistAuGAN
  ☆43Updated 2 years ago
• PathologyDataScience / NuCLS
  NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation
  ☆50Updated 2 years ago
• YohnGuan / NAGCN
  ☆26Updated 2 years ago
• DIAGNijmegen / pathology-streaming-pipeline
  Use streaming to train whole-slides images with single image-level labels, by reducing GPU memory requirements with 99%.
  ☆75Updated 2 years ago
• lucasrla / wsi-preprocessing
  Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning
  ☆52Updated last year
• DIAGNijmegen / pathology-artifact-detection
  Quality control of whole-slide images through multi-class semantic segmentation of artifacts
  ☆30Updated last year
• histocartography / hact-net
  ☆70Updated 3 years ago
• sebastianffx / stainlib
  Python 3 library for the augmentation & normalization of H&E images
  ☆51Updated 2 years ago
• nauyan / NucleiSegmentation
  The repository contains a simple pipeline for training Nuclei Segmentation Datasets of Histopathology Images.
  ☆28Updated 2 years ago
• TissueImageAnalytics / CoNIC
  CoNIC Challenge
  ☆62Updated 11 months ago
• choosehappy / PatchSorter
  A tool for rapidly labeling objects using deep learning feature embedding
  ☆29Updated 5 months ago
• KatherLab / cancer-metadata
  machine-readable information for the TCGA dataset, mirrored from other sources
  ☆15Updated 2 years ago
• KatherLab / end2end-WSI-preprocessing
  End-to-end pipeline to go from raw H&E slides to normalised extracted features for training
  ☆23Updated 10 months ago
• m4ln / stainTransfer_CycleGAN_pytorch
  Image-to-Image Translation in PyTorch
  ☆23Updated last year