dask / dask-image

Related projects ⓘ

Alternatives and complementary repositories for dask-image

• saalfeldlab / n5
  Not HDF5
  ☆163Updated last month
• JaneliaSciComp / xarray-multiscale
  scalable multiscale image pyramids in python
  ☆26Updated 3 months ago
• hms-dbmi / vizarr
  A minimal Zarr image viewer based on Viv.
  ☆124Updated 2 weeks ago
• pangeo-data / rechunker
  Disk-to-disk chunk transformation for chunked arrays.
  ☆163Updated 2 weeks ago
• zarr-developers / zarr_implementations
  ☆38Updated 3 months ago
• constantinpape / z5
  Lightweight C++ and Python interface for datasets in zarr and N5 format
  ☆110Updated 3 weeks ago
• ome / ome-zarr-py
  Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
  ☆156Updated 2 weeks ago
• seung-lab / fastremap
  Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.
  ☆48Updated 4 months ago
• ppinard / matplotlib-scalebar
  Provides a new artist for matplotlib to display a scale bar, aka micron bar.
  ☆146Updated 5 months ago
• zarr-developers / zarr-specs
  Zarr core protocol for storage and retrieval of N-dimensional typed arrays
  ☆88Updated last month
• dask / dask-jobqueue
  Deploy Dask on job schedulers like PBS, SLURM, and SGE
  ☆235Updated 2 months ago
• zarr-developers / numcodecs
  A Python package providing buffer compression and transformation codecs for use in data storage and communication applications.
  ☆127Updated this week
• manzt / simple-zarr-server
  serve Zarr datasets via HTTP
  ☆24Updated last year
• VolkerH / DaskFusion
  Fusing image tiles with dask array's map_blocks
  ☆29Updated 8 months ago
• pyapp-kit / cmap
  Scientific colormaps for python, with only numpy dependency
  ☆86Updated this week
• cubed-dev / cubed
  Bounded-memory serverless distributed N-dimensional array processing
  ☆122Updated this week
• napari / napari.github.io
  website for the napari image viewer
  ☆44Updated this week
• pyapp-kit / ndv
  Simple, fast-loading, n-dimensional array viewer with minimal dependencies.
  ☆40Updated last week
• ome / ngff
  Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
  ☆118Updated this week
• spatial-image / multiscale-spatial-image
  Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.
  ☆38Updated last week
• blink1073 / tifffile
  Deprecated: Read and write image data from and to TIFF files.
  ☆61Updated 5 years ago
• the-lay / tiler
  N-dimensional NumPy array tiling and merging with overlapping, padding and tapering
  ☆66Updated last year
• imjoy-team / imjoy-rpc
  The RPC library used in ImJoy.
  ☆23Updated 3 months ago
• funkey / nyroglancer
  jupyter notebook extension to visualize numpy arrays with the neuroglancer
  ☆28Updated 6 years ago
• zarr-developers / VirtualiZarr
  Create virtual Zarr stores from archival data files using xarray syntax
  ☆121Updated this week
• constantinpape / heimdall
  Python based viewer for large mulit-dimensional datasets.
  ☆20Updated 4 years ago
• czbiohub-sf / iohub
  Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata
  ☆29Updated this week
• janelia-cellmap / pydantic-zarr
  Pydantic models for Zarr
  ☆26Updated 6 months ago
• chanzuckerberg / napari-hub
  Discover, install, and share napari plugins
  ☆51Updated 2 months ago
• vispy / jupyter_rfb
  Remote Frame Buffer for Jupyter
  ☆59Updated 2 weeks ago