nadeemlab / ImPartialLinks
Interactive deep learning whole-cell segmentation and thresholding using partial annotations
☆41Updated last month
Alternatives and similar repositories for ImPartial
Users that are interested in ImPartial are comparing it to the libraries listed below
Sorting:
- An open-source digital pathology based rapid image annotation tool☆90Updated 2 weeks ago
- A Python library for deep learning on whole-slide images☆52Updated 4 years ago
- Analysis of 3D pathology samples using weakly supervised AI - Cell☆113Updated last year
- 🔬 Code-free deep segmentation for computational pathology☆56Updated last year
- Python 3 library for the augmentation & normalization of H&E images☆64Updated 3 years ago
- Pipeline for computational pathology☆37Updated 2 years ago
- A tool for rapidly labeling objects using deep learning feature embedding☆34Updated 5 months ago
- ☆46Updated 4 years ago
- Re-stained whole slide image alignment☆36Updated 2 years ago
- Quality control of whole-slide images through multi-class semantic segmentation of artifacts☆38Updated 2 years ago
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆84Updated last year
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆109Updated 3 months ago
- A pipeline to segment tissue from the background in histological images☆72Updated 2 years ago
- DLBCL-Morph dataset containing high resolution tissue microarray scans from 209 DLBCL cases, with geometric features computed using deep …☆39Updated 5 years ago
- Topological Feature Extraction on Whole Slide Images using Graph Neural Networks.☆22Updated 5 years ago
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/☆28Updated 2 months ago
- GrandQC tool for tissue detection and quality control in pathology☆80Updated last month
- Piecewise alignment for layers of mosaics☆35Updated 5 months ago
- A neural network software for using Molecular labelling to improve pathological annotation of H and E tissues☆32Updated last year
- Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, …☆236Updated this week
- Solid Tumor Associative Modeling in Pathology☆110Updated 2 weeks ago
- Framework for registration of sequential digitized histology slices☆28Updated 3 years ago
- Virtual Alignment of pathoLogy Image Series☆205Updated 7 months ago
- Deep learning enabled assessment of cardiac allograft rejection from endomyocardial biopsies- Nature Medicine☆33Updated 3 years ago
- Coincides with blogpost for using geojson and shapely☆33Updated 5 years ago
- ⚡ Open-source software for deep learning-based digital pathology☆141Updated last year
- NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation☆55Updated 3 years ago
- ☆50Updated 3 years ago
- Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Qu…☆80Updated last year
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆72Updated 3 years ago