A Girder plugin for pathology image annotations and analysis.
☆79Apr 24, 2026Updated 3 weeks ago
Alternatives and similar repositories for HistomicsUI
Users that are interested in HistomicsUI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The official deployment of the Digital Slide Archive and HistomicsTK.☆136Updated this week
- A Python toolkit for pathology image analysis algorithms.☆470Apr 6, 2026Updated last month
- An open-source digital pathology based rapid image annotation tool☆90May 12, 2026Updated last week
- ☆21Dec 30, 2025Updated 4 months ago
- Python modules to work with large multiresolution images.☆221May 13, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation☆56Apr 4, 2022Updated 4 years ago
- A tool for training machine-learning models with whole-slide imaging datasets☆26Dec 27, 2023Updated 2 years ago
- Tile Serving on the web without a server☆17Jan 30, 2026Updated 3 months ago
- Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering☆113Jun 9, 2023Updated 2 years ago
- ⚡ Open-source software for deep learning-based digital pathology☆142Jun 14, 2024Updated last year
- Delete the label from a whole-slide image☆65Mar 18, 2021Updated 5 years ago
- An interactive machine learning framework for large histopathology images.☆21Dec 27, 2023Updated 2 years ago
- HistoQC is an open-source quality control tool for digital pathology slides☆325Apr 13, 2026Updated last month
- Open source whole slide image preparation and viewing pipeline☆13Mar 16, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Histomic Prognostic Signature (HiPS): A population-level computational histologic signature for invasive breast cancer prognosis☆33Apr 9, 2024Updated 2 years ago
- ☆11May 12, 2026Updated last week
- Powerful, open-source AI tools for digital pathology.☆361May 7, 2026Updated 2 weeks ago
- Program for the analysis and visualization of whole-slide images in digital pathology☆673Sep 12, 2023Updated 2 years ago
- Bayesian Inference of Slide-level Confidence via Uncertainty Index Thresholding☆30Sep 6, 2024Updated last year
- Python tool for stitching histopathology tissue fragments into artificial whole-mounts.☆23Dec 5, 2025Updated 5 months ago
- Unsupervised Semantic Segmentation for Pathology☆17Nov 21, 2024Updated last year
- Library for Digital Pathology Image Processing☆457May 11, 2026Updated last week
- ☆22May 8, 2023Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆71Sep 23, 2024Updated last year
- NuHTC: A Hybrid Task Cascade for Nuclei Instance Segmentation and Classification☆26Apr 24, 2026Updated 3 weeks ago
- Strip potentially identifying label and macro images from Aperio SVS whole slide image files☆37Apr 29, 2024Updated 2 years ago
- Computational Pathology Toolbox developed by TIA Centre, University of Warwick.☆527Updated this week
- 🗂️ 🔍 Geospatial Data Management and Search API - Django Apps☆61Jun 21, 2022Updated 3 years ago
- Coincides with blogpost for using geojson and shapely☆33Nov 16, 2020Updated 5 years ago
- convert .kfb format whole slide images to .svs format image for further processing☆17Sep 19, 2020Updated 5 years ago
- ☆59Apr 14, 2025Updated last year
- ☆19Jul 28, 2021Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData☆16Feb 27, 2026Updated 2 months ago
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆114Nov 8, 2025Updated 6 months ago
- Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, …☆250Apr 30, 2026Updated 3 weeks ago
- Comparison and fusion of deep learning and radiomics features of ground-glass nodules to predict the invasiveness risk of stage-I lung ad…☆17Sep 25, 2019Updated 6 years ago
- An open-source, web-based viewer for zoomable images, implemented in pure JavaScript.☆14Apr 24, 2026Updated 3 weeks ago
- HCC_Deep_learning☆18Jun 8, 2020Updated 5 years ago
- A Medical Imaging Quality Assurance tool☆37Jul 10, 2024Updated last year