DigitalSlideArchive / HistomicsUILinks
A Girder plugin for pathology image annotations and analysis.
☆77Updated this week
Alternatives and similar repositories for HistomicsUI
Users that are interested in HistomicsUI are comparing it to the libraries listed below
Sorting:
- The official deployment of the Digital Slide Archive and HistomicsTK.☆131Updated this week
- ⚡ Open-source software for deep learning-based digital pathology☆139Updated last year
- An open-source digital pathology based rapid image annotation tool☆88Updated 2 weeks ago
- 🔬 Code-free deep segmentation for computational pathology☆56Updated last year
- Delete the label from a whole-slide image☆65Updated 4 years ago
- Python library for converting WSI files to DICOM☆79Updated last month
- Quality control of whole-slide images through multi-class semantic segmentation of artifacts☆38Updated last year
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆107Updated last month
- Coincides with blogpost for using geojson and shapely☆33Updated 5 years ago
- ☆66Updated last year
- ☆72Updated last week
- Python wrapper library for PMA.start, a universal viewier for whole slide imaging and microscopy☆33Updated 11 months ago
- Conversion tool/library for converting whole slide images to DICOM☆86Updated 10 months ago
- HistoQC is an open-source quality control tool for digital pathology slides☆312Updated 2 weeks ago
- Interactive deep learning whole-cell segmentation and thresholding using partial annotations☆41Updated 3 months ago
- TiffSlide - cloud native openslide-python replacement based on tifffile☆103Updated 6 months ago
- Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning☆56Updated 2 years ago
- Strip potentially identifying label and macro images from Aperio SVS whole slide image files☆36Updated last year
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆70Updated 3 years ago
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆84Updated last year
- Whole Slide image (WSI) conversion for brightfield histology images☆36Updated 3 weeks ago
- A pipeline to segment tissue from the background in histological images☆71Updated 2 years ago
- Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay☆74Updated 10 months ago
- Virtual Alignment of pathoLogy Image Series☆192Updated 5 months ago
- PAthological QUpath Obsession - QuPath and Python conversations☆126Updated 3 months ago
- Re-stained whole slide image alignment☆35Updated 2 years ago
- QuPath extension for Segment Anything Model (SAM)☆125Updated 4 months ago
- ☆37Updated 8 months ago
- Interoperable web-based DICOM slide microscopy viewer and annotation tool☆153Updated last week
- H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.☆57Updated 2 years ago