Reproducing result from the paper
☆34May 12, 2021Updated 5 years ago
Alternatives and similar repositories for scArches-reproducibility
Users that are interested in scArches-reproducibility are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Blastocyst-like structures generated from human pluripotent stem cells☆13Sep 25, 2022Updated 4 years ago
- ☆16Apr 9, 2021Updated 5 years ago
- ☆20May 1, 2023Updated 3 years ago
- Low-dimensional Projection of Single Cell Velocity☆29Aug 26, 2022Updated 4 years ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Scripts for building computational models of gene regulation with tensorflow☆12Jan 21, 2020Updated 6 years ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆29Feb 4, 2023Updated 3 years ago
- Reference mapping for single-cell genomics☆414Jun 26, 2026Updated 4 months ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆12Jun 17, 2024Updated 2 years ago
- ☆21Jul 6, 2021Updated 5 years ago
- ☆14Mar 29, 2024Updated 2 years ago
- A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence☆10May 15, 2024Updated 2 years ago
- An R package of functions for single cell -omics analysis.☆11Jul 18, 2023Updated 3 years ago
- CellRank's reproducibility repository.☆18Jan 13, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A collection of perl scripts for NGS analysis☆17Oct 2, 2024Updated 2 years ago
- Scripts used to perform the analyses to study the Biology of Myeloid Cells in Glioma Microenvironments☆28May 13, 2025Updated last year
- ☆19Nov 24, 2024Updated last year
- ☆20Sep 29, 2021Updated 5 years ago
- BPNet manuscript code.☆12Dec 1, 2020Updated 5 years ago
- Single cell somatic genotyper☆10Sep 28, 2022Updated 4 years ago
- This repository contains all code used for the Human Lung Cell Atlas project.☆61Aug 21, 2023Updated 3 years ago
- Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.☆103Sep 9, 2025Updated last year
- A public clone of the HypoMap Figure & analysis repository.☆12Sep 26, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆10Jun 5, 2021Updated 5 years ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆12Jan 18, 2021Updated 5 years ago
- Empirical Bayes methods for single cell data☆18Oct 12, 2020Updated 6 years ago
- ☆30Jul 15, 2021Updated 5 years ago
- Spatial RNA velocity☆11Oct 3, 2024Updated 2 years ago
- Codebase for the paper Zucha et al. titled "Spatiotemporal transcriptomic map of glial cell response in mouse model of acute brain ischem…☆15Oct 23, 2024Updated 2 years ago
- ☆17Nov 13, 2021Updated 4 years ago
- Data processing and analysis scripts for our spatial profiling of embryos using seqFISH☆19Feb 10, 2023Updated 3 years ago
- Framework for integrating heterogeneous modalities of data☆17Sep 17, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆16Sep 1, 2023Updated 3 years ago
- ☆23May 12, 2026Updated 5 months ago
- ☆11May 6, 2021Updated 5 years ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆21Sep 8, 2023Updated 3 years ago
- scITDG is a tool for identifying time-dependent genes in single-cell sequencing data☆17Nov 24, 2025Updated 11 months ago
- Rmarkdown / compiled html files for human reprogramming dataset analysis☆18Jun 11, 2020Updated 6 years ago
- Reproducibility of results/figures from scvi-hub paper☆15Apr 16, 2025Updated last year