theislab / scArches-reproducibility
Reproducing result from the paper
☆33Updated 3 years ago
Alternatives and similar repositories for scArches-reproducibility:
Users that are interested in scArches-reproducibility are comparing it to the libraries listed below
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆34Updated last year
- scLearn：Learning for single cell assignment☆35Updated 2 months ago
- This repository contains all code used for the Human Lung Cell Atlas project.☆46Updated last year
- Gene group activity utility functions for Scanpy☆67Updated last month
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆60Updated 9 months ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆39Updated 3 years ago
- Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics☆33Updated last month
- Additional code and analysis from the single-cell integration benchmarking project☆56Updated 2 years ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆30Updated last year
- Single cell omics biology annotations☆48Updated 3 weeks ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆33Updated 7 months ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆39Updated 3 years ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated last year
- Spatial Cellular Estimator for Tumors☆47Updated last week
- CeLEry: cell location recovery in single-cell RNA sequencing☆33Updated this week
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆37Updated 2 years ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆30Updated last week
- A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…☆44Updated 6 months ago
- Predict RNA velocity through deep learning☆66Updated last year
- Low-dimensional Projection of Single Cell Velocity☆28Updated 2 years ago
- Spatial direct messaging detected by bivariate Moran☆25Updated last month
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆28Updated 4 years ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆71Updated 2 months ago
- ☆12Updated 2 years ago
- ☆43Updated 4 months ago
- ☆46Updated last year
- PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.☆28Updated last year
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- Tools used in Human Cell Landscape(HCL)☆53Updated 4 years ago