theislab / scArches-reproducibilityLinks
Reproducing result from the paper
☆34Updated 4 years ago
Alternatives and similar repositories for scArches-reproducibility
Users that are interested in scArches-reproducibility are comparing it to the libraries listed below
Sorting:
- ☆60Updated last year
- scLearn：Learning for single cell assignment☆35Updated 11 months ago
- Predict RNA velocity through deep learning☆70Updated last year
- Reproducibility repository for the Human Neural Organoid Atlas publication☆41Updated 10 months ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆38Updated 4 years ago
- cTPnet Package☆26Updated 3 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆42Updated last year
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆37Updated 2 years ago
- Gene group activity utility functions for Scanpy☆95Updated 10 months ago
- Low-dimensional Projection of Single Cell Velocity☆28Updated 3 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆66Updated 4 months ago
- ☆46Updated last year
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆46Updated 4 years ago
- SPROD: Spatial expression profiling de-noising☆37Updated 2 years ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆115Updated last year
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆33Updated 2 years ago
- ☆33Updated 7 months ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆31Updated 4 years ago
- This repository contains all code used for the Human Lung Cell Atlas project.☆56Updated 2 years ago
- ACTIONet single-cell analysis framework☆43Updated last year
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆26Updated last year
- ☆45Updated 3 months ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 9 months ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆38Updated last year
- PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.☆28Updated last year
- CAST package☆40Updated last year
- ☆44Updated 3 years ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆40Updated 9 months ago