Blazingly fast, streaming duplicate detection for NGS data
☆22Oct 5, 2026Updated 2 weeks ago
Alternatives and similar repositories for dupblaster
Users that are interested in dupblaster are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data☆13Sep 29, 2026Updated 3 weeks ago
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆29Updated this week
- Fast, highly accurate, read-trimming for NGS data.☆26Updated this week
- add true-negative SVs from a population callset to a truth-set.☆14Jun 17, 2022Updated 4 years ago
- Spiritual successor to picard for sequencing qc☆63Oct 16, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- One pure-Rust binary that finds genes in phages, viruses, giant viruses, crassphages, bacteria, archaea, eukaryotes — and raw sequencing …☆36Oct 14, 2026Updated last week
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 6 years ago
- fastVEP: High-performance Variant Effect Predictor in Rust☆159Updated this week
- Per-base per-nucleotide depth analysis☆153May 9, 2026Updated 5 months ago
- Easy genomic regions for short-read variant calling☆46Sep 10, 2025Updated last year
- an API for intersections of genomic data☆149Oct 4, 2026Updated 2 weeks ago
- Toolkit for calling structural variants using short or long reads☆119Aug 21, 2026Updated 2 months ago
- Automated ACMG/AMP classification for human variants associated with congenital hearing loss☆11May 14, 2025Updated last year
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆49Apr 20, 2026Updated 6 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆19Jul 15, 2026Updated 3 months ago
- Kmer Analysis of Pileups for Genotyping☆43Jul 16, 2026Updated 3 months ago
- ☆21Sep 28, 2026Updated 3 weeks ago
- ☆44Jan 14, 2026Updated 9 months ago
- bioinformatics toolkit in rust☆109Aug 16, 2026Updated 2 months ago
- Successor of bwa-mem for short-read alignment☆354Oct 1, 2026Updated 3 weeks ago
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆28Sep 9, 2026Updated last month
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆33Updated this week
- Joint structural variant and copy number variant caller for HiFi sequencing data☆82Nov 4, 2025Updated 11 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- expressions on VCFs☆94Sep 25, 2026Updated 3 weeks ago
- Plot Protein: Visualization of Mutations☆14Nov 29, 2025Updated 10 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆63Jul 5, 2026Updated 3 months ago
- Run a command and report its process tree's CPU, memory, and I/O usage☆21Oct 14, 2026Updated last week
- A nextflow pipeline for calling CNVs in probe-enriched sequencing workflows☆14Updated this week
- Fast, self-contained VCF to MAF converter with embedded annotation (Rust rewrite of vcf2maf)☆26Oct 12, 2026Updated last week
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated 2 years ago
- dot plotter on top of minimap2☆17Oct 4, 2026Updated 2 weeks ago
- This repository contains the `a-liner` script and sample data.☆28Aug 6, 2026Updated 2 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Tools to gather evidence for structural variation via breakpoint detection.☆20Mar 27, 2026Updated 6 months ago
- Convert vcf in parquet☆32Jan 23, 2025Updated last year
- API-first variant triage pipeline combining genomic filtering, annotation, and LLM-driven interpretation for clinical genomics workflows☆21Apr 28, 2026Updated 5 months ago
- HitSV: Maximizing discovery of structural variants across sequencing technologies☆45Aug 12, 2026Updated 2 months ago
- Efficient querying of biological databases☆45Oct 27, 2025Updated 11 months ago
- A Rust library and command line tool for working with genomic ranges and their data.☆103May 29, 2024Updated 2 years ago
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆77Updated this week