abdenlab / oxbowLinks
Oxbow makes genomic data ready for high-performance analytics.
☆108Updated 3 weeks ago
Alternatives and similar repositories for oxbow
Users that are interested in oxbow are comparing it to the libraries listed below
Sorting:
- a minimal, scriptable genome browser for python☆51Updated 6 months ago
- A high-performance BigWig and BigBed library in Rust☆98Updated last month
- Convert bioinformatics file formats to Zarr☆36Updated last month
- Blazing-Fast Bioinformatic Operations on Python DataFrames☆69Updated this week
- A Rust library and command line tool for working with genomic ranges and their data.☆101Updated last year
- Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer☆59Updated 2 months ago
- ☆31Updated last month
- bedtools-like functionality for interval sets in rust☆52Updated 10 months ago
- A high efficiency binary format for sequencing data☆63Updated 2 weeks ago
- Fast FASTQ sample demultiplexing in Rust.☆63Updated last month
- A command line utilty for working with BINSEQ files☆21Updated last week
- Single-cell analysis methods in Rust☆23Updated 3 weeks ago
- Monitor computational workflows in real time☆74Updated last year
- Python wrapper around Nextflow.☆59Updated last week
- A declarative interactive genomics visualization library for Python.☆228Updated 2 weeks ago
- pyranges/bioframe for polars☆18Updated last year
- Turn an existing conda environment into a Singularity container☆80Updated 2 years ago
- Module for embedding igv.js in an IPython notebook☆76Updated 5 months ago
- Partial reimplementation of bcftools for VCF Zarr☆16Updated 3 weeks ago
- Efficient variant-call data storage and retrieval library using the TileDB storage library.☆95Updated last month
- Convert vcf in parquet☆27Updated 5 months ago
- Python bindings to UCSC BigWig and BigBed library☆33Updated 2 months ago
- A Snakemake executor plugin for submitting jobs to a SLURM cluster☆38Updated last week
- Single-Cell RNA-seq pseudo-aligner☆51Updated last year
- ☆16Updated 6 months ago
- Container class to represent genomic locations and support genomic analysis☆22Updated last week
- Single Rust: Pioneering single-cell analysis with Rust's concurrency for scalable, high-throughput pipelines. 🧬🚀☆20Updated last week
- High-throughput gene to knowledge mapping through massive integration of public sequencing data.☆31Updated 6 years ago
- High performance WebGL genome visualization☆15Updated 3 years ago
- Genomic interval operations on Pandas DataFrames☆184Updated last week