Alternatives and similar repositories for oxbow:

Users that are interested in oxbow are comparing it to the libraries listed below

• jackh726 / bigtools
  A high-performance BigWig and BigBed library in Rust
  ☆81Updated 2 weeks ago
• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆102Updated 10 months ago
• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆50Updated 3 months ago
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆62Updated this week
• sgkit-dev / bio2zarr
  Convert bioinformatics file formats to Zarr
  ☆32Updated last week
• biodatageeks / polars-bio
  Blazing-Fast Bioinformatic Operations on Python DataFrames
  ☆55Updated 3 weeks ago
• higlass / higlass-python
  Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer
  ☆59Updated this week
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆51Updated 7 months ago
• BiocPy / GenomicRanges
  Container class to represent genomic locations and support genomic analysis
  ☆20Updated last week
• goodwright / nextflow.py
  Python wrapper around Nextflow.
  ☆59Updated this week
• panoptes-organization / panoptes
  Monitor computational workflows in real time
  ☆72Updated 10 months ago
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆26Updated last week
• higlass / clodius
  Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.
  ☆39Updated last week
• higlass / higlass-docker
  Builds a docker container wrapping higlass-server and higlass-client in nginx
  ☆32Updated 2 years ago
• igvteam / igv-notebook
  Module for embedding igv.js in an IPython notebook
  ☆74Updated 2 months ago
• SamStudio8 / majora2
  Malleable All-seeing Journal Of Research Artifacts
  ☆36Updated last year
• pepkit / geofetch
  Builds a PEP from SRA or GEO accessions
  ☆49Updated 7 months ago
• dbikard / genomenotebook
  A genome browser in your Jupyter notebook
  ☆31Updated 3 months ago
• refgenie / refgenie
  Reference genome resource manager
  ☆76Updated last year
• kaizhang / anndata-rs
  ☆31Updated 2 months ago
• endrebak / poranges
  pyranges/bioframe for polars
  ☆18Updated last year
• SingleRust / SingleRust
  Single Rust: Pioneering single-cell analysis with Rust's concurrency for scalable, high-throughput pipelines. 🧬🚀
  ☆20Updated 3 weeks ago
• pyranges / pyranges_1.x
  PyRanges as a DataFrame subclass.
  ☆16Updated last week
• vembrane / vembrane
  vembrane filters VCF records using python expressions
  ☆58Updated last month
• 10XGenomics / enclone
  VDJ Clonotyping & Analysis Tools
  ☆49Updated last month
• brentp / bw-python
  python wrapper to dpryan79's bigwig library using cffi
  ☆19Updated 8 years ago
• meuleman / epilogos
  Methods for summarizing and visualizing multi-biosample functional genomic annotations
  ☆45Updated 3 weeks ago
• GMOD / jbrowse-jupyter
  A python package for showing JBrowse views
  ☆24Updated last year
• brentp / vcfexpress
  expressions on VCFs
  ☆83Updated last month
• mortazavilab / swan_vis
  A Python library to visualize and analyze long-read transcriptomes
  ☆61Updated last year