Alternatives and similar repositories for oxbow:

Users that are interested in oxbow are comparing it to the libraries listed below

• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆51Updated 4 months ago
• jackh726 / bigtools
  A high-performance BigWig and BigBed library in Rust
  ☆84Updated last month
• sgkit-dev / bio2zarr
  Convert bioinformatics file formats to Zarr
  ☆33Updated this week
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆52Updated 8 months ago
• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆102Updated 11 months ago
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆62Updated 3 weeks ago
• BiocPy / GenomicRanges
  Container class to represent genomic locations and support genomic analysis
  ☆21Updated this week
• kaizhang / anndata-rs
  ☆31Updated this week
• biodatageeks / polars-bio
  Blazing-Fast Bioinformatic Operations on Python DataFrames
  ☆56Updated last month
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆26Updated last month
• GMOD / jbrowse-jupyter
  A python package for showing JBrowse views
  ☆25Updated last year
• 10XGenomics / scan-rs
  Single-cell analysis methods in Rust
  ☆22Updated 5 months ago
• higlass / higlass-python
  Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer
  ☆59Updated last week
• endrebak / poranges
  pyranges/bioframe for polars
  ☆18Updated last year
• higlass / clodius
  Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.
  ☆39Updated last week
• pyranges / pyranges_1.x
  PyRanges as a DataFrame subclass.
  ☆16Updated last week
• VALIS-software / valis-hpgv
  High performance WebGL genome visualization
  ☆15Updated 3 years ago
• refgenie / refgenie
  Reference genome resource manager
  ☆76Updated last year
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆62Updated 8 months ago
• nvictus / pybbi
  Python bindings to UCSC BigWig and BigBed library
  ☆33Updated 3 weeks ago
• fulcrumgenomics / fgpyo
  Quality of life improvements for Bioinformatics in Python.
  ☆28Updated 3 weeks ago
• pepkit / geofetch
  Builds a PEP from SRA or GEO accessions
  ☆49Updated 7 months ago
• 10XGenomics / rust-bwa
  Rust wrapper of the BWA C API
  ☆18Updated 3 years ago
• natir / vcf2parquet
  Convert vcf in parquet
  ☆26Updated 3 months ago
• higlass / higlass-docker
  Builds a docker container wrapping higlass-server and higlass-client in nginx
  ☆32Updated 2 years ago
• SingleRust / SingleRust
  Single Rust: Pioneering single-cell analysis with Rust's concurrency for scalable, high-throughput pipelines. 🧬🚀
  ☆20Updated this week
• meuleman / epilogos
  Methods for summarizing and visualizing multi-biosample functional genomic annotations
  ☆46Updated last month
• mortazavilab / swan_vis
  A Python library to visualize and analyze long-read transcriptomes
  ☆62Updated last week
• sgkit-dev / vcztools
  Partial reimplementation of bcftools for VCF Zarr
  ☆12Updated 2 weeks ago
• brentp / bw-python
  python wrapper to dpryan79's bigwig library using cffi
  ☆19Updated 8 years ago