abdenlab / oxbow
Read specialized NGS formats as data frames in R, Python, and more.
☆69Updated this week
Alternatives and similar repositories for oxbow:
Users that are interested in oxbow are comparing it to the libraries listed below
- A high-performance BigWig and BigBed library in Rust☆78Updated 2 weeks ago
- a minimal, scriptable genome browser for python☆50Updated 3 months ago
- Convert bioinformatics file formats to Zarr☆31Updated last week
- A Rust library and command line tool for working with genomic ranges and their data.☆102Updated 9 months ago
- Fast FASTQ sample demultiplexing in Rust.☆61Updated this week
- bedtools-like functionality for interval sets in rust☆49Updated 7 months ago
- Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer☆55Updated last week
- PyRanges as a DataFrame subclass.☆15Updated this week
- Fast interval intersection library☆35Updated 2 weeks ago
- Fast sequencing data quality metrics☆25Updated this week
- A python package for showing JBrowse views☆23Updated last year
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆44Updated last year
- High-throughput gene to knowledge mapping through massive integration of public sequencing data.☆31Updated 6 years ago
- Container class to represent genomic locations and support genomic analysis☆18Updated this week
- A genome browser in your Jupyter notebook☆30Updated 3 months ago
- A tool for projecting genomic alignments to transcriptomic coordinates☆35Updated 9 months ago
- Module for embedding igv.js in an IPython notebook☆74Updated last month
- expressions on VCFs☆78Updated last month
- FireCloud Service Selector (FISS) -- Python bindings and CLI for FireCloud execution engine☆31Updated this week
- Reference genome resource manager☆75Updated last year
- Builds a PEP from SRA or GEO accessions☆48Updated 6 months ago
- Monitor computational workflows in real time☆71Updated 9 months ago
- Python NGS Repository☆9Updated 7 months ago
- Red-C data processing☆14Updated last year
- Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.☆39Updated last month
- gia: Genomic Interval Arithmetic☆61Updated 7 months ago
- A visual exploration and hypothesis testing tool for 3D genomics☆13Updated 11 months ago
- High performance WebGL genome visualization☆15Updated 3 years ago
- requirements, examples, and tests for expression matrix file formats☆22Updated 6 years ago
- python wrapper to dpryan79's bigwig library using cffi☆19Updated 8 years ago