abdenlab / oxbowLinks
Oxbow makes genomic data ready for high-performance analytics.
☆144Updated 2 weeks ago
Alternatives and similar repositories for oxbow
Users that are interested in oxbow are comparing it to the libraries listed below
Sorting:
- Blazing-Fast Bioinformatic Operations on Python DataFrames☆101Updated 3 weeks ago
- A high-performance BigWig and BigBed library in Rust☆107Updated last month
- Convert bioinformatics file formats to Zarr☆39Updated 5 months ago
- Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer☆61Updated 3 weeks ago
- Genomic interval operations on Pandas DataFrames☆183Updated this week
- A declarative interactive genomics visualization library for Python.☆229Updated last month
- a minimal, scriptable genome browser for python☆52Updated 11 months ago
- Monitor computational workflows in real time☆73Updated last year
- Work with bioinformatic files using Arrow, Polars, and/or DuckDB☆190Updated 8 months ago
- ☆37Updated this week
- A Rust library and command line tool for working with genomic ranges and their data.☆100Updated last year
- Data Science Operations (dso) command line tool☆44Updated 2 months ago
- Rust Backend for PyRanges Operations. More featureful and much faster replacement for the NCLS library☆18Updated last month
- A Snakemake executor plugin for submitting jobs to a SLURM cluster☆42Updated this week
- Single Rust: Pioneering single-cell analysis with Rust's concurrency for scalable, high-throughput pipelines. 🧬🚀☆79Updated last week
- Efficient variant-call data storage and retrieval library using the TileDB storage library.☆99Updated this week
- Performance-critical tools to manipulate, analyze, and process genomic interval data. Primarily focused on building tools for geniml - ou…☆21Updated 2 weeks ago
- bedtools-like functionality for interval sets in rust☆54Updated 3 months ago
- pyranges/bioframe for polars☆18Updated 2 years ago
- Module for embedding igv.js in an IPython notebook☆80Updated 9 months ago
- A visual exploration and hypothesis testing tool for 3D genomics☆13Updated last year
- machine-readable file format for genomic library sequence and structure☆123Updated 2 months ago
- Scalable genetics toolkit☆266Updated last month
- Python bindings to UCSC BigWig and BigBed library☆35Updated 2 weeks ago
- Project metadata manager for PEPs in Python☆38Updated this week
- Partial reimplementation of bcftools for VCF Zarr☆18Updated 4 months ago
- Single-cell analysis methods in Rust☆27Updated 2 weeks ago
- PyRanges as a DataFrame subclass.☆24Updated 3 weeks ago
- Python wrapper around Nextflow.☆60Updated 3 weeks ago
- Example genomics data for tool developers☆117Updated last year