Oxbow makes genomic data ready for high-performance analytics.
☆153May 7, 2026Updated 2 weeks ago
Alternatives and similar repositories for oxbow
Users that are interested in oxbow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A high-performance BigWig and BigBed library in Rust☆115May 6, 2026Updated 2 weeks ago
- a minimal, scriptable genome browser for python☆54Dec 20, 2024Updated last year
- Genomic interval operations on Pandas DataFrames☆191May 4, 2026Updated 2 weeks ago
- Rust Backend for PyRanges Operations. More featureful and much faster replacement for the NCLS library☆32Apr 16, 2026Updated last month
- Python language bindings for bwa☆12Mar 27, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Blazing-Fast Bioinformatic Operations on Python DataFrames☆161May 14, 2026Updated last week
- Fast interval intersection library☆44Aug 20, 2025Updated 9 months ago
- Work with bioinformatic files using Arrow, Polars, and/or DuckDB☆195Mar 10, 2025Updated last year
- Plotting average TAD heatmap for Hi-C data (give TAD segmentation and cool/hiclib interactions map).☆10Jun 5, 2021Updated 4 years ago
- Red-C data processing☆15Apr 18, 2023Updated 3 years ago
- Convert bioinformatics file formats to Zarr☆47May 8, 2026Updated 2 weeks ago
- Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer☆65May 12, 2026Updated last week
- a lexicographically-based GTF/GFF sorter☆39Mar 16, 2026Updated 2 months ago
- A Jupyter widget for comparing two embeddings with shared labels by their confusion, neighborhoods, and size.☆49Nov 14, 2024Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- A Rust library and command line tool for working with genomic ranges and their data.☆100May 29, 2024Updated last year
- Python bindings to UCSC BigWig and BigBed library☆36Apr 6, 2026Updated last month
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆78Jul 22, 2025Updated 10 months ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.☆39Apr 20, 2026Updated last month
- Jupyter notebook based genomic data visualization toolkit.☆257Dec 4, 2025Updated 5 months ago
- Genomic Features in Python from BioConductor's AnnotationHub☆23Apr 27, 2026Updated 3 weeks ago
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 2 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Single-cell Hi-C data analysis toolbox☆28Aug 13, 2021Updated 4 years ago
- bioinformatics toolkit in rust☆107May 14, 2026Updated last week
- Pipeline to analyse ChIP-Rx data, i.e ChIP-Seq with reference exogenous genome spike-in normalization☆14Apr 11, 2026Updated last month
- From C to R and back again☆12Jan 4, 2021Updated 5 years ago
- Prototype your Jupyter Widget in the browser with anywidget and JupyterLite 💡☆17Apr 7, 2025Updated last year
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆14Dec 22, 2025Updated 4 months ago
- A simple native R reader for Zarr Arrays☆50Updated this week
- Builds a docker container wrapping higlass-server and higlass-client in nginx☆34May 31, 2022Updated 3 years ago
- Efficient querying of biological databases☆44Oct 27, 2025Updated 6 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Interactive bioinformatics tutorials☆37Apr 14, 2026Updated last month
- Grammar of Scalable Linked Interactive Nucleotide Graphics☆188Apr 2, 2026Updated last month
- A command line program for large scale buffering between piped programs☆17Nov 19, 2021Updated 4 years ago
- Pyranges: a Python framework for ultrafast sequence interval operations☆56Apr 21, 2026Updated last month
- Lightweight Python interfaces for reading, writing, and querying genomic regions (BED)☆15Updated this week
- Cookiecutter profile for making a NextFlow-based bioinformatics tool☆17Jul 8, 2024Updated last year
- Container class to represent genomic locations and support genomic analysis☆27Updated this week