systematic explanation of attribution-based mechanisms for regulatory genomics
☆18May 29, 2026Updated 2 months ago
Alternatives and similar repositories for seam-nn
Users that are interested in seam-nn are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Repository for modeling PRO-cap data with the BPNet-like model, ProCapNet.☆22Aug 28, 2025Updated 11 months ago
- Dataloader for applying sequence models to personalized genomics☆29Updated this week
- Genomic sequence preprocessing toolkit☆14Jul 27, 2026Updated last week
- Transcription Factor Motif Instance Neighborhood Decomposition and Interpretation☆25Updated this week
- ☆49May 7, 2026Updated 3 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆36Jan 27, 2025Updated last year
- A framework to score and analyze variant effects genome-wide using ChromBPNet models☆20Mar 2, 2026Updated 5 months ago
- ☆12Apr 28, 2026Updated 3 months ago
- A useful tool for shuffling biological sequences while preserving the k-let counts☆14Apr 23, 2024Updated 2 years ago
- Annotated sequence data☆11Feb 2, 2025Updated last year
- A command-line tool to mitigate homology-based data leakage in sequence-to-expression models☆23Jun 8, 2026Updated 2 months ago
- ☆19Apr 16, 2026Updated 3 months ago
- A high-performance BigWig and BigBed library in Rust☆119Jul 6, 2026Updated last month
- Biological sequence analysis for the modern age.☆308Jul 19, 2026Updated 3 weeks ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- surrogate quantitative interpretability for deepnets☆25Aug 11, 2025Updated 11 months ago
- PARM: Promoter Activity Regulatory Model☆25Jul 27, 2026Updated 2 weeks ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆98Jun 10, 2026Updated 2 months ago
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆110Jun 23, 2026Updated last month
- pycistarget is a python module to perform motif enrichment analysis in sets of regions with different tools and identify high confidence …☆20Apr 14, 2026Updated 3 months ago
- In-silico Saturation Mutagenesis implementation with 10x or more speedup for certain architectures.☆23Jun 18, 2022Updated 4 years ago
- ☆52Mar 22, 2026Updated 4 months ago
- ☆11Aug 21, 2024Updated last year
- CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…☆76Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆40Mar 27, 2025Updated last year
- a minimal, scriptable genome browser for python☆54Dec 20, 2024Updated last year
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆92Sep 24, 2025Updated 10 months ago
- This repository hosts a minimal version of a Python API for BPNet.☆60Jul 19, 2026Updated 3 weeks ago
- Namespace encoding hierarchical relationships between proteins, protein families, and protein complexes.☆12Mar 9, 2021Updated 5 years ago
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆244Jun 9, 2026Updated 2 months ago
- ☆15Dec 11, 2022Updated 3 years ago
- Identifying transcription factor binding sites from neural network contribution scores☆25Nov 8, 2025Updated 9 months ago
- PyTorch implementation of Basenji2.☆22Apr 29, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- FlashRNA - An Efficient Model for Regulatory Genomics☆18Oct 15, 2025Updated 9 months ago
- ☆19Mar 21, 2024Updated 2 years ago
- Best practices for readable, sharable, and verifiable R code☆18Mar 26, 2019Updated 7 years ago
- splicing and feature maps for RBPs☆25Apr 26, 2026Updated 3 months ago
- Causal inference, differential expression, and co-expression for scRNA-seq☆21Jun 11, 2026Updated last month
- ☆99Apr 3, 2026Updated 4 months ago
- RNA-seq prediction with deep convolutional neural networks.☆259Aug 28, 2025Updated 11 months ago