openvax / gtfparseLinks
Parsing tools for GTF (gene transfer format) files
☆121Updated 6 months ago
Alternatives and similar repositories for gtfparse
Users that are interested in gtfparse are comparing it to the libraries listed below
Sorting:
- Python biomart API☆68Updated 2 years ago
- A simple pythonic interface to biomart.☆56Updated 5 years ago
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆32Updated 4 years ago
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆120Updated last year
- Pure-python implementation of UCSC liftOver genome coordinate conversion☆97Updated last year
- Tools for making plots of genomic datasets in a genome-browser-like format☆32Updated 8 months ago
- A Python implementation of edgeR for differential expression analysis☆103Updated 6 years ago
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆84Updated 4 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆85Updated 3 months ago
- Analysis pipeline for the GUIDE-seq assay.☆27Updated 3 weeks ago
- Tools for working with BUS files☆101Updated 3 months ago
- MOODS: Motif Occurrence Detection Suite☆105Updated 2 years ago
- Pangolin is a deep-learning method for predicting splice site strengths.☆78Updated last year
- CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots☆96Updated last year
- machine-readable file format for genomic library sequence and structure☆121Updated this week
- Analysis pipeline for the GUIDE-seq assay.☆78Updated 2 years ago
- Porting DESeq2 into python via rpy2☆68Updated 2 years ago
- Tools for manipulating biological data, particularly multiple sequence alignments☆158Updated 3 weeks ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆125Updated 5 years ago
- Module for embedding igv.js in an IPython notebook☆78Updated 6 months ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆106Updated 2 months ago
- Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.☆111Updated 11 months ago
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆111Updated 9 months ago
- Extract data quickly from Juicebox via straw☆69Updated 4 months ago
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆105Updated 2 months ago
- FlashFry: The rapid CRISPR target site characterization tool☆76Updated last year
- Deep-learning Augmented RNA-seq analysis of Transcript Splicing☆114Updated last year
- Lightweight converter between hic and cool contact matrices.☆74Updated last year
- All source code of the crispor.org website☆78Updated 7 months ago
- Quantification of transposable element expression using RNA-seq☆74Updated last year