openvax / gtfparseLinks
Parsing tools for GTF (gene transfer format) files
☆125Updated 10 months ago
Alternatives and similar repositories for gtfparse
Users that are interested in gtfparse are comparing it to the libraries listed below
Sorting:
- A simple pythonic interface to biomart.☆57Updated 5 years ago
- Python biomart API☆69Updated 2 years ago
- Tools for making plots of genomic datasets in a genome-browser-like format☆33Updated last year
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆84Updated 4 years ago
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆123Updated 3 months ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆90Updated 2 months ago
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆32Updated 4 years ago
- Tools for working with BUS files☆102Updated 7 months ago
- Analysis pipeline for the GUIDE-seq assay.☆80Updated 2 years ago
- machine-readable file format for genomic library sequence and structure☆126Updated 4 months ago
- Tools for manipulating biological data, particularly multiple sequence alignments☆159Updated last month
- Pure-python implementation of UCSC liftOver genome coordinate conversion☆101Updated last year
- A Python implementation of edgeR for differential expression analysis☆104Updated 6 years ago
- CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots☆96Updated last year
- MOODS: Motif Occurrence Detection Suite☆112Updated 2 years ago
- liftover for python, made fast with cython☆95Updated 3 months ago
- Module for embedding igv.js in an IPython notebook☆80Updated 11 months ago
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆108Updated 2 months ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆107Updated 7 months ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆128Updated 5 years ago
- A modular Hi-C mapping pipeline☆100Updated last year
- Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.☆112Updated last year
- FlashFry: The rapid CRISPR target site characterization tool☆79Updated last year
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆50Updated 2 years ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆73Updated this week
- IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:☆52Updated last week
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆111Updated 2 months ago
- Porting DESeq2 into python via rpy2☆67Updated 2 years ago
- Normalization of RNA-seq gene expression☆104Updated 6 months ago
- Pangolin is a deep-learning method for predicting splice site strengths.☆84Updated last year