openvax / gtfparse
Parsing tools for GTF (gene transfer format) files
☆116Updated 10 months ago
Alternatives and similar repositories for gtfparse:
Users that are interested in gtfparse are comparing it to the libraries listed below
- Tools for working with BUS files☆93Updated 3 months ago
- Python biomart API☆65Updated last year
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆82Updated 3 years ago
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆29Updated 3 years ago
- A modular Hi-C mapping pipeline☆89Updated 2 months ago
- A (mostly) universal methylation extractor for BS-seq experiments.☆168Updated 7 months ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆99Updated 3 months ago
- machine-readable file format for genomic library sequence and structure☆118Updated 3 weeks ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆43Updated 2 years ago
- A simple pythonic interface to biomart.☆55Updated 5 years ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆123Updated 4 years ago
- A tool for bigWig files.☆119Updated 6 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆76Updated 2 months ago
- Quantification of transposable element expression using RNA-seq☆64Updated last year
- Pure-python implementation of UCSC liftOver genome coordinate conversion☆92Updated last year
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆101Updated last month
- integrated RNA-seq Analysis Pipeline☆85Updated 6 years ago
- CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots☆91Updated 6 months ago
- Porting DESeq2 into python via rpy2☆68Updated last year
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆108Updated 3 months ago
- [REPLACED by https://github.com/antigenomics/mirpy] Post-analysis of immune repertoire sequencing data☆134Updated 8 months ago
- Publication quality NGS track plotting☆111Updated 2 years ago
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆115Updated last year
- ☆116Updated last year
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆123Updated 5 months ago
- Bioinformatics tools for Python☆24Updated 2 months ago
- Pangolin is a deep-learning method for predicting splice site strengths.☆67Updated 7 months ago
- Very simple, pure python, BAM file reader☆79Updated 5 years ago
- Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.☆110Updated 5 months ago
- HiC uniform processing pipeline☆58Updated last year