Alternatives and similar repositories for marsilea

Users that are interested in marsilea are comparing it to the libraries listed below

• DingWB / PyComplexHeatmap
  PyComplexHeatmap: A Python package to plot complex heatmap (clustermap)
  ☆364Updated 3 months ago
• mortazavilab / PyWGCNA
  PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)
  ☆284Updated 11 months ago
• scverse / decoupler
  Python package to perform enrichment analysis from omics data.
  ☆248Updated this week
• bionumpy / bionumpy
  Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/
  ☆290Updated 7 months ago
• scverse / muon
  muon is a multimodal omics Python framework
  ☆259Updated last week
• scverse / pertpy
  Single-cell perturbation analysis
  ☆267Updated this week
• scverse / scirpy
  A scanpy extension to analyse single-cell TCR and BCR data.
  ☆244Updated this week
• scverse / rapids_singlecell
  rapids_singlecell: GPU-accelerated framework for scRNA analysis
  ☆290Updated this week
• genialis / RNAnorm
  Normalization of RNA-seq gene expression
  ☆104Updated 6 months ago
• slowkow / awesome-vdj
  📚 Tools and databases for analyzing HLA and VDJ genes.
  ☆235Updated last week
• Teichlab / celltypist
  A tool for semi-automatic cell type classification
  ☆445Updated last week
• pwwang / scplotter
  scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing data in an easy…
  ☆286Updated this week
• Winnie09 / GPTCelltype
  ☆219Updated last year
• saezlab / liana-py
  LIANA+: an all-in-one framework for cell-cell communication
  ☆259Updated this week
• pachterlab / kb_python
  A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing
  ☆182Updated last week
• jmschrei / tangermeme
  Biological sequence analysis for the modern age.
  ☆260Updated last month
• theislab / scib
  Benchmarking analysis of data integration tools
  ☆400Updated 4 months ago
• STOmics / Stereopy
  A toolkit of spatial transcriptomic analysis.
  ☆270Updated last month
• broadinstitute / ssGSEA2.0
  Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
  ☆308Updated 3 months ago
• scverse / SnapATAC2
  Single-cell epigenomics analysis tools
  ☆300Updated last week
• dylkot / cNMF
  Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data
  ☆399Updated 4 months ago
• saezlab / corneto
  Unified knowledge-driven network inference from omics data
  ☆91Updated this week
• GuyTeichman / RNAlysis
  Analyze your RNA sequencing data without writing a single line of code
  ☆140Updated 7 months ago
• slowkow / harmonypy
  🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.
  ☆246Updated last week
• morris-lab / CellOracle
  This is the alpha version of the CellOracle package
  ☆408Updated last year
• openproblems-bio / openproblems
  Formalizing and benchmarking open problems in single-cell genomics
  ☆420Updated last month
• theislab / cellrank
  CellRank: dynamics from multi-view single-cell data
  ☆411Updated 2 months ago
• saezlab / pypath
  Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…
  ☆156Updated last week
• kundajelab / chrombpnet
  Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)
  ☆201Updated 4 months ago
• theislab / diffxpy
  Differential expression analysis for single-cell RNA-seq data.
  ☆206Updated 2 months ago