Declarative creation of composable visualization for Python (Complex heatmap, Upset plot, Oncoprint and more~)
☆323Aug 23, 2026Updated 2 weeks ago
Alternatives and similar repositories for marsilea
Users that are interested in marsilea are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Legend made easy for matplotlib☆36Aug 27, 2026Updated last week
- PyComplexHeatmap: A Python package to plot complex heatmap (clustermap)☆407Sep 1, 2026Updated last week
- Spatial analysis toolkit for single cell multiplexed tissue data☆30Sep 2, 2024Updated 2 years ago
- Python package to perform enrichment analysis from omics data.☆293Aug 31, 2026Updated last week
- A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.☆760Aug 31, 2026Updated last week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Automatically annotate cell types, consistently across samples.☆27Aug 31, 2026Updated last week
- Single-cell epigenomics analysis tools☆323Aug 15, 2026Updated 3 weeks ago
- A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.☆1,193Updated this week
- Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/☆288Jun 16, 2025Updated last year
- Patchwork for matplotlib: A subplot manager for intuitive layouts in matplotlib and seaborn.☆438Dec 4, 2025Updated 9 months ago
- Gene Set Enrichment Analysis in Python☆710Updated this week
- Accessible and interoperable whole slide image analysis☆323Aug 30, 2026Updated last week
- Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)☆1,120Jun 14, 2026Updated 2 months ago
- rapids-singlecell: GPU-accelerated framework for scRNA analysis☆394Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A tool for semi-automatic cell type classification☆502May 22, 2026Updated 3 months ago
- Python implementation of Gene Trajectory☆29Sep 4, 2024Updated 2 years ago
- PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)☆300Feb 17, 2025Updated last year
- Universal Single-Cell Genomics Preprocessing package☆52Jul 29, 2026Updated last month
- 🧬 gget enables efficient querying of genomic reference databases☆1,197Updated this week
- CeMM's Snakemake SLURM cluster profile☆50Oct 8, 2025Updated 11 months ago
- Robust and scalable single-cell signature scoring☆28Sep 1, 2026Updated last week
- LIANA+: an all-in-one framework for cell-cell communication☆313Updated this week
- A Snakemake workflow and MrBiomics module for processing and visualizing (multimodal) sc/snRNA-seq data generated with 10X Genomics Kits …☆60Jan 29, 2026Updated 7 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Workflow to Fetch Public Sequencing Data and Metadata Using iSeq and MrBiomics Module.☆47Jun 23, 2025Updated last year
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆89Nov 16, 2025Updated 9 months ago
- AnnData interoperability in R☆195Aug 31, 2026Updated last week
- Single-cell analysis in Python. Scales to >100M cells.☆2,554Updated this week
- High-Performance Sparse Matrix Library☆19Nov 23, 2025Updated 9 months ago
- CellRank: dynamics from multi-view single-cell data☆456Aug 31, 2026Updated last week
- Prism themes for plotnine, inspired by ggprism.☆18Aug 13, 2025Updated last year
- A Snakemake workflow and MrBiomics module for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered…☆56Sep 5, 2025Updated last year
- Normalization of RNA-seq gene expression☆106Jul 8, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.☆254Aug 4, 2026Updated last month
- genes and genomes at your fingertips☆411Jun 9, 2026Updated 2 months ago
- https://www.sc-best-practices.org☆1,261Aug 29, 2026Updated last week
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆109Aug 10, 2026Updated 3 weeks ago
- A Snakemake workflow and MrBiomics module for performing perturbation analyses of pooled (multimodal) CRISPR screens with sc/snRNA-seq re…☆56Dec 7, 2025Updated 9 months ago
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆198Updated this week
- Comprehensive pipeline for donor demultiplexing in single cell☆26Updated this week