Marsilea-viz / marsileaView external linksLinks
Declarative creation of composable visualization for Python (Complex heatmap, Upset plot, Oncoprint and more~)
☆306Feb 3, 2026Updated 2 weeks ago
Alternatives and similar repositories for marsilea
Users that are interested in marsilea are comparing it to the libraries listed below
Sorting:
- Legend made easy for matplotlib☆33Jun 7, 2025Updated 8 months ago
- PyComplexHeatmap: A Python package to plot complex heatmap (clustermap)☆368Updated this week
- Spatial analysis toolkit for single cell multiplexed tissue data☆30Sep 2, 2024Updated last year
- A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.☆731Feb 9, 2026Updated last week
- Automatically annotate cell types, consistently across samples.☆18Feb 9, 2026Updated last week
- Python package to perform enrichment analysis from omics data.☆254Feb 9, 2026Updated last week
- A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.☆834Updated this week
- Single-cell epigenomics analysis tools☆308Feb 1, 2026Updated 2 weeks ago
- rapids_singlecell: GPU-accelerated framework for scRNA analysis☆298Feb 10, 2026Updated last week
- Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/☆291Jun 16, 2025Updated 8 months ago
- Gene Set Enrichment Analysis in Python☆690Dec 17, 2025Updated last month
- PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)☆289Feb 17, 2025Updated 11 months ago
- A tool for semi-automatic cell type classification☆451Jan 31, 2026Updated 2 weeks ago
- Patchwork for matplotlib: A subplot manager for intuitive layouts in matplotlib and seaborn.☆430Dec 4, 2025Updated 2 months ago
- Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)☆1,040Oct 3, 2025Updated 4 months ago
- Accessible and interoperable whole slide image analysis☆183Feb 10, 2026Updated last week
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆86Nov 16, 2025Updated 3 months ago
- Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.☆237Feb 4, 2026Updated last week
- 🧬 gget enables efficient querying of genomic reference databases☆1,098Updated this week
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆99Dec 6, 2025Updated 2 months ago
- AnnData interoperability in R☆149Updated this week
- https://www.sc-best-practices.org☆1,139Updated this week
- Single-cell analysis in Python. Scales to >100M cells.☆2,345Updated this week
- genes and genomes at your fingertips☆407Sep 30, 2025Updated 4 months ago
- Universal Single-Cell Genomics Preprocessing package☆48Feb 8, 2026Updated last week
- CellRank: dynamics from multi-view single-cell data☆427Updated this week
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆180Feb 9, 2026Updated last week
- python module to plot beautiful and highly customizable genome browser tracks☆864Jul 10, 2024Updated last year
- Efficient data structures and IO for whole slide image analysis☆18Feb 8, 2026Updated last week
- LIANA+: an all-in-one framework for cell-cell communication☆269Jan 24, 2026Updated 3 weeks ago
- Visualising data frames as funky heatmaps 📊☆192Dec 12, 2025Updated 2 months ago
- Single-cell perturbation analysis☆284Feb 10, 2026Updated last week
- Python implementation of Gene Trajectory☆30Sep 4, 2024Updated last year
- An open and interoperable data framework for spatial omics data☆348Updated this week
- Genomic interval operations on Pandas DataFrames☆188Feb 2, 2026Updated 2 weeks ago
- Spatial Single Cell Analysis in Python☆551Feb 9, 2026Updated last week
- Prism themes for plotnine, inspired by ggprism.☆16Aug 13, 2025Updated 6 months ago
- CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots☆96Aug 1, 2024Updated last year
- muon is a multimodal omics Python framework☆262Jan 19, 2026Updated 3 weeks ago