Marsilea-viz / marsilea

Related projects ⓘ

Alternatives and complementary repositories for marsilea

• saezlab / decoupler-py
  Python package to perform enrichment analysis from omics data.
  ☆166Updated 2 months ago
• scverse / muon
  muon is a multimodal omics Python framework
  ☆218Updated 3 weeks ago
• saezlab / liana-py
  LIANA+: an all-in-one framework for cell-cell communication
  ☆166Updated 2 months ago
• Teichlab / celltypist
  A tool for semi-automatic cell type classification
  ☆296Updated 5 months ago
• theislab / scib
  Benchmarking analysis of data integration tools
  ☆303Updated last month
• icbi-lab / infercnvpy
  Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.
  ☆137Updated this week
• Genentech / scimilarity
  A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…
  ☆93Updated this week
• colomemaria / epiScanpy
  Episcanpy: Epigenomics Single Cell Analysis in Python
  ☆141Updated this week
• zktuong / dandelion
  dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data
  ☆109Updated this week
• theislab / scarches
  Reference mapping for single-cell genomics
  ☆335Updated 3 weeks ago
• scverse / scirpy
  A scanpy extension to analyse single-cell TCR and BCR data.
  ☆220Updated this week
• bionumpy / bionumpy
  Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/
  ☆240Updated this week
• scverse / rapids_singlecell
  Rapids_singlecell: A GPU-accelerated tool for scRNA analysis. Offers seamless scverse compatibility for efficient single-cell data proces…
  ☆151Updated this week
• pachterlab / kb_python
  A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing
  ☆154Updated last month
• chanzuckerberg / cellxgene-census
  CZ CELLxGENE Discover Census
  ☆86Updated this week
• theislab / diffxpy
  Differential expression analysis for single-cell RNA-seq data.
  ☆193Updated last year
• scverse / pertpy
  Perturbation Analysis in the scverse ecosystem.
  ☆141Updated 3 weeks ago
• slowkow / awesome-vdj
  📚 Tools and databases for analyzing HLA and VDJ genes.
  ☆210Updated 6 months ago
• Teichlab / bbknn
  Batch balanced KNN
  ☆149Updated last year
• scverse / scanpy-tutorials
  Scanpy Tutorials.
  ☆188Updated this week
• aristoteleo / spateo-release
  Spatiotemporal modeling of spatial transcriptomics
  ☆214Updated this week
• kaizhang / SnapATAC2
  Single-cell epigenomics analysis tools
  ☆231Updated 3 weeks ago
• BiomedicalMachineLearning / stLearn
  A novel machine learning pipeline to analyse spatial transcriptomics data
  ☆200Updated 5 months ago
• KrishnaswamyLab / SingleCellWorkshop
  ☆88Updated 3 years ago
• dpeerlab / SEACells
  SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data
  ☆147Updated 4 months ago
• digitalcytometry / cytospace
  CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data
  ☆115Updated 6 months ago
• changwn / scFEA
  single cell Flux Estimation Analysis (scFEA) Try the below web server!
  ☆102Updated last year
• mortazavilab / PyWGCNA
  PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)
  ☆215Updated 2 weeks ago
• LewisLabUCSD / Ligand-Receptor-Pairs
  Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.
  ☆121Updated last year
• aertslab / scenicplus
  SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…
  ☆186Updated 2 months ago