BioinfoUNIBA / REDItools2

Related projects ⓘ

Alternatives and complementary repositories for REDItools2

• olarerin / metaPlotR
  A Perl/R pipeline for plotting metagenes
  ☆35Updated 3 years ago
• iprada / Circle-Map
  A method for circular DNA detection based on probabilistic mapping of ultrashort reads
  ☆61Updated 4 months ago
• nerettilab / RepEnrich2
  RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.
  ☆36Updated 2 years ago
• mhammell-laboratory / TElocal
  A package for quantifying transposable elements at a locus level for RNAseq datasets.
  ☆24Updated 2 months ago
• FelixKrueger / SNPsplit
  Allele-specific alignment sorting
  ☆53Updated last year
• BioinfoUNIBA / REDItools
  REDItools are python scripts to investigate RNA editing at genomic scale.
  ☆60Updated 3 weeks ago
• yezhengSTAT / CUTTag_tutorial
  Tutorial Website
  ☆53Updated 3 years ago
• FenyoLab / L1EM
  Estimate locus specific human LINE-1 expression.
  ☆32Updated 2 years ago
• LabTranslationalArchitectomics / riboWaltz
  optimization of ribosome P-site positioning in ribosome profiling data
  ☆45Updated 10 months ago
• ucagenomix / sicelore
  Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…
  ☆72Updated last year
• zhqingit / giremi
  GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.
  ☆42Updated 7 years ago
• BioinfoUNIBA / QEdit
  RNA editing quantification in deep transcriptome data
  ☆15Updated 2 years ago
• Xinglab / espresso
  ☆58Updated 3 months ago
• xuzhougeng / R-ChIP-data-analysis
  ☆51Updated 6 years ago
• wyang17 / SQuIRE
  Software for Quantifying Interspersed Repeat Expression
  ☆49Updated 2 years ago
• 3UTR / DaPars2
  Dynamics analysis of Alternative PolyAdenylation from RNA-seq
  ☆50Updated last year
• a2iEditing / RNAEditingIndexer
  A tool for the calculation of RNA-editing index for RNA seq data
  ☆39Updated 9 months ago
• zhpn1024 / ribotish
  Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data
  ☆26Updated this week
• dekkerlab / cworld-dekker
  perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)
  ☆64Updated 5 years ago
• MonashBioinformaticsPlatform / RSeQC
  fork of RSeQC python RNAseq metrics suit of tools
  ☆46Updated 5 years ago
• OlgaVT / Alternative-Splicing-Tools
  A list of alternative splicing analysis resources
  ☆37Updated last week
• dieterich-lab / JACUSA2
  New version of JACUSA -> 2.0
  ☆23Updated this week
• nloyfer / UXM_deconv
  ☆37Updated last year
• smithlabcode / ribotricer
  A tool for accurately detecting actively translating ORFs from Ribo-seq data
  ☆35Updated 7 months ago
• mlbendall / telescope
  Quantification of transposable element expression using RNA-seq
  ☆64Updated 9 months ago
• GooglingTheCancerGenome / sv-callers
  Snakemake-based workflow for detecting structural variants in genomic data
  ☆77Updated 9 months ago
• PulverCyril / craTEs
  Estimate the cis-regulatory activity of transposable element (TEs) subfamilies
  ☆10Updated 11 months ago
• ENCODE-DCC / long-read-rna-pipeline
  ENCODE long read RNA-seq pipeline
  ☆44Updated last year
• vastgroup / vast-tools
  A toolset for profiling alternative splicing events in RNA-Seq data.
  ☆78Updated 4 months ago