BioinfoUNIBA / REDItoolsLinks
REDItools are python scripts to investigate RNA editing at genomic scale.
☆69Updated 6 months ago
Alternatives and similar repositories for REDItools
Users that are interested in REDItools are comparing it to the libraries listed below
Sorting:
- ☆60Updated 6 months ago
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated last month
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆65Updated last year
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆78Updated 2 years ago
- Full-length transcriptome splicing and mutation analysis☆86Updated last year
- ☆64Updated 4 months ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆30Updated last week
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- ☆49Updated 3 years ago
- Quantification of transposable element expression using RNA-seq☆82Updated 2 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- Publication quality NGS track plotting☆117Updated 3 months ago
- A Perl/R pipeline for plotting metagenes☆37Updated 4 years ago
- Estimate locus specific human LINE-1 expression.☆39Updated 3 weeks ago
- optimization of ribosome P-site positioning in ribosome profiling data☆59Updated 11 months ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆43Updated 3 months ago
- Software for Quantifying Interspersed Repeat Expression☆65Updated 3 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆63Updated 2 years ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆63Updated 4 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- Allele-specific alignment sorting☆61Updated 3 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆124Updated this week
- A toolset for profiling alternative splicing events in RNA-Seq data.☆87Updated last year
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆84Updated 4 years ago
- HiC uniform processing pipeline☆62Updated 2 years ago
- release version☆58Updated 3 years ago
- tools to find circRNAs in RNA-seq data☆45Updated 8 years ago
- ☆51Updated 7 years ago
- Tutorial Website☆63Updated 5 years ago
- From RNA-seq raw reads to enriched pathways by DEGs☆33Updated last year