BioinfoUNIBA / REDItools
REDItools are python scripts to investigate RNA editing at genomic scale.
☆60Updated 3 weeks ago
Related projects ⓘ
Alternatives and complementary repositories for REDItools
- ☆53Updated 3 years ago
- Full-length transcriptome splicing and mutation analysis☆73Updated 4 months ago
- optimization of ribosome P-site positioning in ribosome profiling data☆45Updated 10 months ago
- Microsatellite instability (MSI) detection for tumor only data.☆94Updated 6 months ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆72Updated 3 years ago
- ☆75Updated 2 weeks ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆50Updated last year
- ☆115Updated last year
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆72Updated last year
- Allele-specific alignment sorting☆53Updated last year
- Tutorial Website☆53Updated 3 years ago
- A tool for the calculation of RNA-editing index for RNA seq data☆39Updated 9 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆36Updated 2 years ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆61Updated 4 months ago
- A Perl/R pipeline for plotting metagenes☆35Updated 3 years ago
- Single cell Nanopore sequencing data for Genotype and Phenotype☆40Updated 2 months ago
- ☆58Updated 3 months ago
- circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data☆44Updated last month
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆26Updated this week
- From RNA-seq raw reads to enriched pathways by DEGs☆31Updated 6 months ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated last week
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆69Updated 4 years ago
- SNV calling from single cell sequencing☆84Updated last week
- Estimate locus specific human LINE-1 expression.☆32Updated 2 years ago
- fork of RSeQC python RNAseq metrics suit of tools☆46Updated 5 years ago
- 🍪 SEnsible Step-wise Analysis of DNA MEthylation BeadChips☆62Updated 2 weeks ago
- ☆51Updated 6 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆50Updated 3 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆78Updated 4 months ago
- mgatk: mitochondrial genome analysis toolkit☆103Updated 8 months ago