BioinfoUNIBA / REDItoolsLinks
REDItools are python scripts to investigate RNA editing at genomic scale.
☆67Updated 8 months ago
Alternatives and similar repositories for REDItools
Users that are interested in REDItools are comparing it to the libraries listed below
Sorting:
- ☆58Updated 3 years ago
- Full-length transcriptome splicing and mutation analysis☆83Updated last year
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆74Updated 2 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 4 months ago
- Software for Quantifying Interspersed Repeat Expression☆60Updated 3 years ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆64Updated last year
- release version☆54Updated 2 years ago
- ☆61Updated 11 months ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- ☆50Updated 6 years ago
- Allele-specific alignment sorting☆58Updated 2 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- Microsatellite instability (MSI) detection for tumor only data.☆108Updated last year
- Publication quality NGS track plotting☆114Updated 3 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆81Updated 5 months ago
- fork of RSeQC python RNAseq metrics suit of tools☆48Updated 6 years ago
- tools to find circRNAs in RNA-seq data☆43Updated 7 years ago
- ☆95Updated last week
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆115Updated 5 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆61Updated last year
- Estimate locus specific human LINE-1 expression.☆36Updated 2 years ago
- Quantification of transposable element expression using RNA-seq☆71Updated last year
- ☆44Updated 2 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆46Updated 3 months ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆28Updated 5 months ago
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆62Updated last year
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated last year
- FEELnc : FlExible Extraction of LncRNA☆90Updated 10 months ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 4 years ago