gatk-workflows / gatk4-rnaseq-germline-snps-indelsLinks
Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools
☆76Updated 3 years ago
Alternatives and similar repositories for gatk4-rnaseq-germline-snps-indels
Users that are interested in gatk4-rnaseq-germline-snps-indels are comparing it to the libraries listed below
Sorting:
- ☆59Updated 3 years ago
- Tutorial Website☆59Updated 4 years ago
- ☆73Updated last month
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆113Updated 4 months ago
- A list of alternative splicing analysis resources☆43Updated 2 months ago
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 3 months ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆62Updated 4 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆81Updated 4 months ago
- A toolkit for QC and visualization of ATAC-seq results.☆70Updated 4 months ago
- Estimate locus specific human LINE-1 expression.☆35Updated 2 years ago
- Allele-specific alignment sorting☆56Updated 2 years ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 6 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- fork of RSeQC python RNAseq metrics suit of tools☆48Updated 6 years ago
- Links to ATAC-seq analysis tools☆66Updated 3 years ago
- ☆69Updated last year
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆66Updated 5 years ago
- Estimation of Promoter Activity from RNA-Seq data☆53Updated 3 years ago
- ☆30Updated 6 years ago
- ☆43Updated 2 years ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆26Updated 4 months ago
- Publication quality NGS track plotting☆113Updated 2 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆73Updated 2 years ago
- SingleCell Nanopore sequencing data analysis☆60Updated this week
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated last year
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆73Updated 2 weeks ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆63Updated 10 months ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆59Updated last year