prescient-design / cortexLinks
A Modular Architecture for Deep Learning Systems
☆45Updated 5 months ago
Alternatives and similar repositories for cortex
Users that are interested in cortex are comparing it to the libraries listed below
Sorting:
- RITA is a family of autoregressive protein models, developed by LightOn in collaboration with the OATML group at Oxford and the Debora Ma…☆98Updated 2 years ago
- [ICML 25] We train and evaluate SAEs to identify interpretable features in pLMs and show their potential for scientific discovery.☆119Updated 2 weeks ago
- Implementation and replication of ProGen, Language Modeling for Protein Generation, in Jax☆112Updated 4 years ago
- Implementation of Nvidia's NeuralPlexer, for end-to-end differentiable design of functional small-molecules and ligand-binding proteins, …☆51Updated last year
- Protein structure datasets for machine learning.☆112Updated 6 months ago
- Benchmark for Biophysical Sequence Optimization Algorithms☆20Updated 5 months ago
- Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation☆134Updated this week
- A list of manuscripts/tools using diffusion on biological enttieis☆97Updated 2 years ago
- Code for 'On Pre-trained Language Models For Antibody'☆32Updated 2 years ago
- ☆57Updated last year
- ProtMamba: a homology-aware but alignment-free protein state space model☆79Updated 4 months ago
- Official implementation of "Learning the language of protein structures"☆39Updated 4 months ago
- Official repository for discrete Walk-Jump Sampling (dWJS)☆53Updated last year
- In-silico design pipeline for evaluating protein structure diffusion models.☆27Updated last year
- Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation☆124Updated 2 years ago
- ☆127Updated last year
- Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch☆158Updated 2 years ago
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆160Updated 2 years ago
- ☆47Updated 3 months ago
- ML-guided enzyme engineering☆68Updated last week
- Open source code for AlphaFold to extract protein embeddings☆27Updated 4 years ago
- This repo contains the results data for Round 1 of Adaptyv Bio’s EGFR Protein Design Competition.☆34Updated 10 months ago
- Code for the paper Context-Guided Diffusion for Out-of-Distribution Molecular and Protein Design☆39Updated last year
- Protein Design with Guided Discrete Diffusion☆136Updated last year
- Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequ…☆89Updated 3 years ago
- Consolidated repository to perform RLXF☆34Updated 2 weeks ago
- Source code for RNA-FrameFlow: SE(3) Flow Matching for 3D RNA Backbone Design☆79Updated last week
- Code for "Biological Sequence Design with GFlowNets", 2022☆74Updated 2 years ago
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆64Updated 5 months ago
- A diffusion model for structure-based drug design with faster inference from learned representations of protein structure.☆31Updated last year