A Modular Architecture for Deep Learning Systems
☆53May 23, 2025Updated 9 months ago
Alternatives and similar repositories for cortex
Users that are interested in cortex are comparing it to the libraries listed below
Sorting:
- Benchmark for Biophysical Sequence Optimization Algorithms☆20May 21, 2025Updated 9 months ago
- Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation☆147Updated this week
- Code to reproduce experiments in "Accelerating Bayesian Optimization for Protein Design with Denoising Autoencoders" (Stanton et al 2022)☆74May 19, 2024Updated last year
- Protein Design with Guided Discrete Diffusion☆141Feb 21, 2024Updated 2 years ago
- Sequences from Adaptyv Bio’s EGFR Protein Design Competition☆15Aug 28, 2025Updated 6 months ago
- Code for NeurIPS 2024 paper "A SARS-CoV-2 Interaction Dataset and VHH Sequence Corpus for Antibody Language Models"☆14Oct 17, 2024Updated last year
- Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape☆35Dec 8, 2025Updated 2 months ago
- Results and data from the pilot round of the Protein Engineering Tournament☆30Mar 25, 2025Updated 11 months ago
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆37Nov 7, 2024Updated last year
- Meta learning addresses noisy and under-labeled data in machine learning-guided antibody engineering (https://doi.org/10.1016/j.cels.2023…☆21Aug 8, 2024Updated last year
- This is the official code repository for the paper FLOP: Tasks for Fitness Landscapes Of Protein wildtypes by Groth et al.☆22Jun 26, 2023Updated 2 years ago
- LAAVA: Long-read AAV Analysis☆13Dec 9, 2025Updated 2 months ago
- Class to view Alphafold models☆11Jan 20, 2023Updated 3 years ago
- Differentiable Pairing using Alignment-based Language Models☆24Jan 5, 2024Updated 2 years ago
- Adapting protein language models for structure-conditioned design☆40Aug 5, 2024Updated last year
- In-silico design pipeline for evaluating protein structure diffusion models.☆29Jun 25, 2024Updated last year
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆13Jul 9, 2025Updated 7 months ago
- Conditioning diffusion models for scaffolding protein motifs. A repository for my master's dissertation.☆12Dec 10, 2024Updated last year
- ☆14Jan 5, 2024Updated 2 years ago
- Inpainting protein sequence and structure☆12Nov 10, 2023Updated 2 years ago
- ☆21Oct 26, 2024Updated last year
- A Python package to manage protein design workflows on computing clusters and local machines. Documentation can be found here: https://pr…☆40Jan 21, 2026Updated last month
- Structure prediction of alternative protein conformations☆82Feb 24, 2025Updated last year
- ☆76Oct 27, 2021Updated 4 years ago
- Chroma Protein Diffusion Model☆12Nov 16, 2023Updated 2 years ago
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆267Apr 27, 2025Updated 10 months ago
- Inference code for Bio-Inspired Antibody Language Model☆26Aug 26, 2024Updated last year
- ☆212Sep 24, 2024Updated last year
- An antibody-specific language model focusing on NGL prediction☆36Aug 22, 2024Updated last year
- Implementation of Evolutionary and Metropolis Hastings Monte Carlo for text based (e.g. nucleotide/peptide) sequences☆13Mar 7, 2024Updated last year
- A simple but powerful VSCode extension for visualizing protein structures using the Molstar framework.☆34Oct 17, 2025Updated 4 months ago
- Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation☆127Jan 8, 2023Updated 3 years ago
- D. E. Shaw Research Technical Reports☆13Jul 4, 2022Updated 3 years ago
- Protein structure datasets for machine learning.☆115Apr 22, 2025Updated 10 months ago
- Biological prediction models made simple.☆49Jan 13, 2026Updated last month
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆93Apr 24, 2024Updated last year
- Protein structure diffusion model for unconditional protein generation and motif scaffolding☆188Jun 24, 2024Updated last year
- Expert-Guided Protein Language Models enable Accurate and Blazingly Fast Fitness Prediction☆17Feb 6, 2026Updated 3 weeks ago
- SARS-CoV-2 RBD antibody escape calculator☆12Nov 19, 2024Updated last year