mabr3112 / ProtFlowLinks
A Python package to manage protein design workflows on computing clusters and local machines. Documentation can be found here: https://protflow.readthedocs.io/en/latest/
☆26Updated this week
Alternatives and similar repositories for ProtFlow
Users that are interested in ProtFlow are comparing it to the libraries listed below
Sorting:
- Metrics for our protein design competitions.☆35Updated last year
- Generative diverse protein backbones by protein language model☆34Updated this week
- ☆21Updated last year
- ☆20Updated last year
- ☆71Updated 7 months ago
- Efficient manipulation of protein structures in Python☆58Updated last month
- Template-based protein design with Raygun☆76Updated this week
- ☆28Updated 2 years ago
- ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…☆64Updated last month
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆86Updated 4 months ago
- ☆47Updated 9 months ago
- ☆39Updated last year
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆55Updated last month
- ☆44Updated last year
- This repo contains the results data for Round 1 of Adaptyv Bio’s EGFR Protein Design Competition.☆34Updated 10 months ago
- Code for running BinderFlow☆31Updated last week
- Consolidated repository to perform RLXF☆34Updated 2 weeks ago
- ☆25Updated 2 months ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆32Updated 2 years ago
- Design data and process for the AdaptyvBio protein design competition☆10Updated 10 months ago
- Physical energy function for protein sequence design☆33Updated 2 years ago
- Updated Protpardelle models with more robust motif scaffolding and multichain support☆45Updated last week
- One protein is all you need☆45Updated last week
- Structure prediction of alternative protein conformations☆80Updated 8 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆56Updated 5 months ago
- Parametric Building of de novo Functional Topologies☆44Updated 3 years ago
- ☆36Updated last year
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆68Updated 3 months ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated 2 years ago
- Code for designing binders to flexible peptides with AlphaFold2 Hallucination☆28Updated last year