In-silico design pipeline for evaluating protein structure diffusion models.
☆32Jun 25, 2024Updated 2 years ago
Alternatives and similar repositories for insilico_design_pipeline
Users that are interested in insilico_design_pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Protein structure diffusion model for unconditional protein generation and motif scaffolding☆195Jun 24, 2024Updated 2 years ago
- ☆12Apr 6, 2024Updated 2 years ago
- ☆52Jun 19, 2024Updated 2 years ago
- Allosteric design of proteins using allosteric pathways, stability calculations, and normal mode analysis☆12Jan 11, 2026Updated 9 months ago
- Updated Protpardelle models with more robust motif scaffolding and multichain support☆90Oct 2, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Genie 3 is a fast, all-atom SE(3)-equivariant diffusion model for protein design. It achieves state-of-the-art performance on uncondition…☆140Oct 12, 2026Updated 3 weeks ago
- Chroma Protein Diffusion Model☆12Nov 16, 2023Updated 2 years ago
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆13Nov 14, 2025Updated 11 months ago
- ☆47Sep 16, 2024Updated 2 years ago
- Code for RL-DIF☆16Jun 24, 2025Updated last year
- Flow-matching for coarse graining of miniproteins.☆20Nov 18, 2022Updated 3 years ago
- A tool for mapping protein-protein, protein-nucleic acid, and antigen-antibody interactions☆14May 14, 2025Updated last year
- Associated code/pipeline for the publication "AI-assisted protein design to rapidly convert antibody sequences to intrabodies targeting d…☆18Feb 18, 2025Updated last year
- ☆15Jun 24, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆19Dec 23, 2024Updated last year
- A standardized protein design benchmark for motif-scaffolding problems☆84Updated this week
- ☆236Mar 2, 2024Updated 2 years ago
- Fast protein backbone generation with SE(3) flow matching.☆328Jul 19, 2024Updated 2 years ago
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆156Apr 16, 2025Updated last year
- Design a local part of a protein☆20Jan 12, 2023Updated 3 years ago
- Fold Conditioned protein design pipeline based on AF2Multimer Hallucination☆56Jun 22, 2026Updated 4 months ago
- ☆35Feb 12, 2025Updated last year
- ☆12Jun 16, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- PINDER: The Protein INteraction Dataset and Evaluation Resource☆159Sep 14, 2026Updated last month
- Implementation of Denoising Diffusion for protein design, but using the new Equiformer (successor to SE3 Transformers) with some addition…☆57Dec 27, 2022Updated 3 years ago
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆74Aug 4, 2026Updated 3 months ago
- Python Toolbox For Rosetta Silent Files Processing☆10Aug 2, 2021Updated 5 years ago
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆191Apr 21, 2024Updated 2 years ago
- AlphaFold Meets Flow Matching for Generating Protein Ensembles☆547Mar 22, 2026Updated 7 months ago
- Aligning protein generative models with experimental fitness☆155Mar 12, 2026Updated 7 months ago
- Code for AlphaFold Distillation for Protein Design☆29Sep 18, 2025Updated last year
- The Family of Diffusion Protein Language Models (DPLM)☆350Jul 25, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Metrics to evaluate distributional coverage of generative models of protein structures.☆22Aug 13, 2025Updated last year
- FoldFlow: SE(3)-Stochastic Flow Matching for Protein Backbone Generation☆300Dec 10, 2024Updated last year
- This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.☆15Jul 25, 2023Updated 3 years ago
- Codes for scientific charts☆11Dec 30, 2025Updated 10 months ago
- Nextflow pipeline to do protein design tasks at the end of 2025.☆12Oct 26, 2026Updated last week
- HBDesigner is an algorithm that designs highly-connected hydrogen bonding networks that fit the requested design constraints onto an inpu…☆23Oct 26, 2026Updated last week
- Evolutionary Algorithm with Diffusion Models for Protein Design☆31Jan 7, 2026Updated 10 months ago