Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity
☆13Jul 9, 2025Updated 8 months ago
Alternatives and similar repositories for Graphinity
Users that are interested in Graphinity are comparing it to the libraries listed below
Sorting:
- Inpainting protein sequence and structure☆12Nov 10, 2023Updated 2 years ago
- Antigen-receptor Design Against Peptide-MHC Targets☆20Jan 9, 2026Updated 2 months ago
- Fast, gene-specific joint humanisation of antibody heavy and light chains.☆19Nov 11, 2025Updated 4 months ago
- Parameter estimation for PDEs☆10Sep 12, 2019Updated 6 years ago
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆23Jul 9, 2024Updated last year
- Therapeutic Nanobody Profiler☆20Nov 11, 2025Updated 4 months ago
- ☆12Dec 2, 2024Updated last year
- Foundation model-driven lab☆24Apr 13, 2025Updated 11 months ago
- Code and software used to design de novo protein nanomachines. Supplementary material for "Computational design of nanoscale rotational m…☆10Mar 19, 2022Updated 4 years ago
- Updated Protpardelle models with more robust motif scaffolding and multichain support☆72Mar 7, 2026Updated last week
- ☆22Apr 10, 2025Updated 11 months ago
- Tokenizing Loops of Antibodies☆24Nov 23, 2025Updated 3 months ago
- Code for designing binders to flexible peptides with AlphaFold2 Hallucination☆30Dec 21, 2023Updated 2 years ago
- A structure checker in python☆24Nov 25, 2024Updated last year
- Evaluating Protein Binding Interfaces with Transformer Networks☆47Oct 24, 2023Updated 2 years ago
- Machine learning-driven antibody design☆63Jul 5, 2023Updated 2 years ago
- ☆15Mar 28, 2025Updated 11 months ago
- Repo of AntiBMPNN project for antibody sequence design.☆33May 28, 2025Updated 9 months ago
- ☆47Sep 16, 2024Updated last year
- An antibody-specific language model focusing on NGL prediction☆37Aug 22, 2024Updated last year
- Fold Conditioned protein design pipeline based on AF2Multimer Hallucination☆50Dec 2, 2025Updated 3 months ago
- PyPEF – Pythonic Protein Engineering Framework☆14Updated this week
- The MULTICOM protein structure system. This repository includes the source code and documents of both template-based and template-free mo…☆17Nov 2, 2021Updated 4 years ago
- Scores for Hydrophobicity and Charges based on SASAs☆41Jun 12, 2025Updated 9 months ago
- ☆27Aug 8, 2025Updated 7 months ago
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated last year
- ☆15Jun 11, 2021Updated 4 years ago
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆57Jul 9, 2025Updated 8 months ago
- ☆10May 22, 2024Updated last year
- ☆19Jan 14, 2026Updated 2 months ago
- ☆28Aug 26, 2025Updated 6 months ago
- Design a local part of a protein☆20Jan 12, 2023Updated 3 years ago
- Implementation of KDR-Agent, the AAAI 2025 accepted paper, focusing on knowledge-driven reasoning for autonomous agents.☆18Nov 24, 2025Updated 3 months ago
- ☆12Mar 28, 2025Updated 11 months ago
- Improved antibody structure-based design using inverse folding☆154Dec 9, 2025Updated 3 months ago
- ☆23Jul 30, 2024Updated last year
- DeepSP is an antibody-specific surrogate CNN model that can generate 30 spatial properties of an antibody solely based on their sequences…☆19Feb 23, 2026Updated 3 weeks ago
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Oct 27, 2021Updated 4 years ago
- Code for AlphaFold Distillation for Protein Design☆26Sep 18, 2025Updated 6 months ago