samuelstanton / lamboLinks
Code to reproduce experiments in "Accelerating Bayesian Optimization for Protein Design with Denoising Autoencoders" (Stanton et al 2022)
☆71Updated last year
Alternatives and similar repositories for lambo
Users that are interested in lambo are comparing it to the libraries listed below
Sorting:
- Code for "Biological Sequence Design with GFlowNets", 2022☆74Updated 2 years ago
- ☆30Updated 2 years ago
- A library of discrete objectives☆21Updated last month
- Bayesian Optimisation for String Spaces☆24Updated 3 years ago
- Benchmark for Biophysical Sequence Optimization Algorithms☆20Updated 3 months ago
- ☆44Updated 2 years ago
- GeneDisco is a benchmark suite for evaluating active learning algorithms for experimental design in drug discovery.☆40Updated 2 years ago
- Official repository for discrete Walk-Jump Sampling (dWJS)☆53Updated last year
- Official repository for the paper "Improving black-box optimization in VAE latent space using decoder uncertainty" (Pascal Notin, José Mi…☆31Updated last year
- Lagrangian formulation of Doob's h-transform allowing for efficient rare event sampling☆50Updated 5 months ago
- A short and easy PyTorch implementation of E(n) Equivariant Graph Neural Networks☆134Updated 3 years ago
- Implementation of methods to sample from Boltzmann distributions☆20Updated 2 years ago
- Code to accompany the paper "Constrained Bayesian Optimisation for Automatic Chemical Design" https://pubs.rsc.org/en/content/articlehtml…☆52Updated 2 years ago
- Code for the ICML 2019 paper 'Conditioning by adaptive sampling for robust design'☆36Updated 4 years ago
- PyTorch implementation for our paper "Proximal Exploration for Model-guided Protein Sequence Design"☆36Updated 2 years ago
- Code for the paper Context-Guided Diffusion for Out-of-Distribution Molecular and Protein Design☆39Updated last year
- Official repository for discrete Walk-Jump Sampling (dWJS)☆57Updated last year
- ☆59Updated 3 years ago
- This Denoising Force Field (DFF) codebase provides a Pytorch framework for the method presented in Two for one: Diffusion models and forc…☆65Updated last year
- ☆33Updated 6 months ago
- ☆219Updated last year
- [ICLR 2022] Data-Efficient Graph Grammar Learning for Molecular Generation☆96Updated 2 years ago
- Code for our paper "Barking up the right tree: an approach to search over molecule synthesis DAGs"☆47Updated last year
- Benchmarks for Model-Based Optimization☆94Updated last year
- Code for our paper "Unlocking Guidance for Discrete State-Space Diffusion and Flow Models"☆27Updated 4 months ago
- Massively-Parallel Natural Extension of Reference Frame☆32Updated 2 years ago
- A Library for Gaussian Processes in Chemistry☆240Updated 10 months ago
- Protein Design with Guided Discrete Diffusion☆133Updated last year
- Code for the paper LaM-SLidE - Latent Space Modeling of Spatial Dynamical Systems via Linked Entities☆25Updated 3 months ago
- Code for the paper Iterated Denoising Energy Matching for Sampling from Boltzmann Densities.☆59Updated 4 months ago