Alternatives and similar repositories for Chroma:

Users that are interested in Chroma are comparing it to the libraries listed below

• DeepGraphLearning / DiffPack
  Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing
  ☆84Updated last year
• lucidrains / neural-plexer-pytorch
  Implementation of Nvidia's NeuralPlexer, for end-to-end differentiable design of functional small-molecules and ligand-binding proteins, …
  ☆50Updated last year
• rish-16 / rna-backbone-design
  Source code for RNA-FrameFlow: SE(3) Flow Matching for 3D RNA Backbone Design
  ☆50Updated last month
• cieplinski-tobiasz / smina-docking-benchmark
  ☆71Updated 2 years ago
• blondegeek / e3nn
  A modular framework for neural networks with Euclidean symmetry
  ☆11Updated 9 months ago
• sab148 / MiSaTo-dataset
  ☆29Updated last year
• uw-ipd / tmol
  TMol
  ☆32Updated this week
• anton-bushuiev / PPIformer
  Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)
  ☆45Updated 3 months ago
• escalante-bio / boltz-binder-design
  ☆38Updated 3 weeks ago
• learningmatter-mit / GenZProt
  ☆27Updated last year
• pinder-org / pinder
  PINDER: The Protein INteraction Dataset and Evaluation Resource
  ☆113Updated 5 months ago
• divelab / GraphBP
  Official implementation of "Generating 3D Molecules for Target Protein Binding" [ICML2022 Long Presentation]
  ☆107Updated last year
• HannesStark / FlowSite
  Implementation of FlowSite and HarmonicFlow from the paper "Harmonic Self-Conditioned Flow Matching for Multi-Ligand Docking and Binding …
  ☆95Updated 8 months ago
• ml-jku / vnegnn
  ☆31Updated last month
• noegroup / flowm
  Flow-matching for coarse graining of miniproteins.
  ☆18Updated 2 years ago
• microsoft / two-for-one-diffusion
  This Denoising Force Field (DFF) codebase provides a Pytorch framework for the method presented in Two for one: Diffusion models and forc…
  ☆58Updated 10 months ago
• ketatam / DiffDock-PP
  Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)
  ☆203Updated last year
• drorlab / DIPS
  Database of Interacting Protein Structures (DIPS)
  ☆99Updated last year
• Profluent-Internships / MMDiff
  Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion
  ☆57Updated 11 months ago
• mirunacrt / synflownet
  A GFlowNet with a chemical synthesis action space.
  ☆48Updated 2 months ago
• Croydon-Brixton / pymol-remote
  Send data to and from pymol from a remote server (e.g. a cluster running deep learning workflows)
  ☆26Updated 2 months ago
• shuyana / DiffusionProteinLigand
  ☆79Updated last year
• EleutherAI / mp_nerf
  Massively-Parallel Natural Extension of Reference Frame
  ☆31Updated 2 years ago
• cch1999 / posecheck
  Pose checks for 3D Structure-based Drug Design methods
  ☆80Updated 5 months ago
• amyxlu / cheap-proteins
  Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…
  ☆115Updated 2 weeks ago
• Genentech / equifold
  Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation
  ☆121Updated 2 years ago
• Graylab / GeoDock
  Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.
  ☆93Updated 8 months ago
• prescient-design / cortex
  A Modular Architecture for Deep Learning Systems
  ☆40Updated last week
• Graylab / DFMDock
  DFMDock (Denoising Force Matching Dock), a diffusion model that unifies sampling and ranking within a single framework.
  ☆43Updated last month
• molML / s4-for-de-novo-drug-design
  The official codebase of the paper "Chemical language modeling with structured state space sequence models"
  ☆76Updated 8 months ago