Alternatives and similar repositories for DiffPALM

Users that are interested in DiffPALM are comparing it to the libraries listed below

• mjendrusch / salad
  protein structure generation with sparse all-atom denoising models
  ☆40Updated 2 weeks ago
• tiwarylab / af2rave
  Boltzmann-ranked alternative protein conformations from reduced-MSA AlphaFold2
  ☆58Updated 2 months ago
• haddocking / arctic3d
  Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information
  ☆32Updated this week
• vsomnath / flexdock
  Composing Unbalanced Flows for Flexible Docking and Relaxation (ICLR 2025)
  ☆50Updated 3 months ago
• ShenLab / SeqDance
  code for SeqDance/ESMDance, biophysics-informed protein language models
  ☆40Updated 6 months ago
• mirabdi / PDAnalysis
  ☆32Updated last year
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆54Updated 4 months ago
• LDeng0205 / StaB-ddG
  Predicting mutational effects on protein binding from folding energy. ICML 2025.
  ☆30Updated 2 months ago
• svats73 / mdml
  mdml: Deep Learning for Molecular Simulations
  ☆47Updated 4 months ago
• KULL-Centre / _2023_Tesei_IDRome
  ☆45Updated 5 months ago
• GMdSilva / gms_natcomms_1705932980_data
  Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2
  ☆39Updated last year
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆43Updated 2 months ago
• whitead / protein-emoji
  Files and utilities for protein-emoji
  ☆21Updated 2 years ago
• KULL-Centre / _2024_cagiada_stability
  ☆71Updated 6 months ago
• CSB-KaracaLab / prot-on
  This repo contains the collection of codes to find designer interfacial mutations
  ☆17Updated 2 years ago
• LDeng0205 / confidence-bootstrapping
  Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.
  ☆27Updated last year
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆39Updated last year
• compsciencelab / mdCATH
  This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…
  ☆46Updated 10 months ago
• giacomo-janson / sam2
  Deep generative modeling of protein structural ensembles
  ☆28Updated 2 weeks ago
• patrickbryant1 / Cfold
  Structure prediction of alternative protein conformations
  ☆79Updated 7 months ago
• wallnerlab / AFsample2
  Modelling protein conformational landscape with Alphafold
  ☆53Updated last month
• microsoft / bioemu-benchmarks
  Benchmarking code accompanying the release of `bioemu`
  ☆45Updated 3 months ago
• RSvan / SPEACH_AF
  ☆16Updated last year
• johnyang101 / pmpnndiff
  Repository for Fast Non-autoregressive Inverse Folding with Discrete Diffusion
  ☆18Updated last year
• tiwarylab / GrASP
  Graph Attention Site Prediction (GrASP): Identifying Druggable Binding Sites Using Graph Neural Networks with Attention
  ☆54Updated 3 months ago
• CataAI / PoseX
  PoseX: A Molecular Docking Benchmark
  ☆49Updated 3 months ago
• ProteinDesignLab / protein_shapes
  Metrics to evaluate distributional coverage of generative models of protein structures.
  ☆17Updated last month
• barricklab-at-jhu / SVD-of-MSAs
  This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…
  ☆11Updated last year
• kosonocky / bits-to-binders-resources
  Resources for the BioML Challenge 2024: Bits to Binders
  ☆18Updated last year
• Croydon-Brixton / proteinmpnn_wrapper
  A thin wrapper around ProteinMPNN for convenient sampling without having to write out or consume files
  ☆11Updated last year