Differentiable Pairing using Alignment-based Language Models
☆24Jan 5, 2024Updated 2 years ago
Alternatives and similar repositories for DiffPALM
Users that are interested in DiffPALM are comparing it to the libraries listed below
Sorting:
- Transformer for protein function prediction (version 2)☆15Jan 8, 2026Updated 2 months ago
- MEGADOCK on Google Colaboratory☆20Oct 2, 2023Updated 2 years ago
- 3D-CNN based water position prediction method☆11Nov 20, 2023Updated 2 years ago
- Bib'23: Improved the Heterodimer Protein Complex Prediction with Protein Language Models☆15Dec 21, 2023Updated 2 years ago
- ☆47Sep 16, 2024Updated last year
- KDS software for Kinase Drug Selectivity☆11Jun 8, 2023Updated 2 years ago
- A Modular Architecture for Deep Learning Systems☆54May 23, 2025Updated 9 months ago
- ☆12Jun 16, 2023Updated 2 years ago
- Resources for the BioML Challenge 2024: Bits to Binders☆19Aug 24, 2024Updated last year
- ☆11Jan 2, 2021Updated 5 years ago
- Antibody-Specific Epitope Mapping☆17Sep 10, 2025Updated 6 months ago
- Protein structure diffusion model for unconditional protein generation and motif scaffolding☆190Jun 24, 2024Updated last year
- ☆40Sep 17, 2024Updated last year
- Models trained on the SPICE dataset☆10Sep 23, 2022Updated 3 years ago
- Code for NeurIPS 2023 paper "AVIDa-hIL6: A Large-Scale VHH Dataset Produced from an Immunized Alpaca for Predicting Antigen-Antibody Inte…☆21Nov 19, 2024Updated last year
- GNN enabled surrogate modeling for chemical docking☆15Nov 3, 2022Updated 3 years ago
- ProtMamba: a homology-aware but alignment-free protein state space model☆85Jun 3, 2025Updated 9 months ago
- Iterative masking algorithm on MSA Transformer to generate synthetic sequences☆28Jan 17, 2024Updated 2 years ago
- ☆88Nov 18, 2025Updated 4 months ago
- Augmented Memory and Beam Enumeration implementation☆27Jun 9, 2024Updated last year
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆43May 15, 2024Updated last year
- Meta learning addresses noisy and under-labeled data in machine learning-guided antibody engineering (https://doi.org/10.1016/j.cels.2023…☆22Aug 8, 2024Updated last year
- ☆14Jul 5, 2022Updated 3 years ago
- ☆17Mar 26, 2024Updated last year
- Template-based protein design with Raygun☆77Feb 7, 2026Updated last month
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆331Oct 28, 2024Updated last year
- An implementation of ESM2 in Equinox+JAX☆36Jun 5, 2025Updated 9 months ago
- iFeatureOmega is a comprehensive platform for generating, analyzing and visualizing more than 170 representations for biological sequence…☆33May 23, 2022Updated 3 years ago
- A simulator for ecological dynamics written in Julia.☆27Mar 5, 2026Updated 2 weeks ago
- Scripts to do docking, single virtual screening, and etc.☆21Dec 19, 2023Updated 2 years ago
- EViS: an Enhanced Virtual Screening Approach based on Pocket Ligand Similarity☆14Dec 7, 2021Updated 4 years ago
- Conformer multi-instance machine Learning☆60Sep 29, 2025Updated 5 months ago
- Supporting models and data to doi 10.1021/acs.jcim.1c01163☆15Oct 11, 2022Updated 3 years ago
- ☆70Feb 13, 2026Updated last month
- Denoising diffusion probabilistic models for replica exchange☆25Feb 19, 2022Updated 4 years ago
- Printing text using protein structures☆14Aug 9, 2021Updated 4 years ago
- Computational Chemistry Workflows☆56Jul 19, 2022Updated 3 years ago
- An interpretable and flexible deep learning framework for single-T cell transcriptome and receptor analysis☆14Apr 5, 2025Updated 11 months ago
- Python module for identification of conserved water molecules from molecular dynamics trajectories.☆14Mar 13, 2026Updated last week