Bitbol-Lab / DiffPALMLinks
Differentiable Pairing using Alignment-based Language Models
☆22Updated last year
Alternatives and similar repositories for DiffPALM
Users that are interested in DiffPALM are comparing it to the libraries listed below
Sorting:
- protein structure generation with sparse all-atom denoising models☆32Updated 3 weeks ago
- ☆16Updated 10 months ago
- ☆32Updated last year
- code for SeqDance/ESMDance, biophysics-informed protein language models☆37Updated 2 months ago
- Boltzmann-ranked alternative protein conformations from reduced-MSA AlphaFold2☆48Updated 2 weeks ago
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆43Updated 7 months ago
- Protein-Ligand Binding Affinity Prediction with GNN and Transfer Learning From Protein Language Models☆30Updated 3 weeks ago
- Composing Unbalanced Flows for Flexible Docking and Relaxation (ICLR 2025)☆43Updated last week
- ☆67Updated 3 months ago
- The software system of improving AlphaFold2- and AlphaFold-Multimer-based protein tertiary & quaternary structure prediction. It was deve…☆28Updated last year
- Source code and examples for AlphaFold Unmasked☆68Updated last month
- ☆35Updated last year
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆44Updated 5 months ago
- Extension of ThermoMPNN for double mutant predictions☆33Updated 3 months ago
- Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information☆30Updated 2 weeks ago
- DFMDock (Denoising Force Matching Dock), a diffusion model that unifies sampling and ranking within a single framework.☆46Updated last week
- test☆14Updated 4 years ago
- Metrics for our protein design competitions.☆31Updated 7 months ago
- This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…☆11Updated 10 months ago
- Implementation of Protein Invariant Point Packer (PIPPack)☆32Updated last year
- PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.☆29Updated 2 years ago
- mdml: Deep Learning for Molecular Simulations☆42Updated last month
- ☆42Updated 2 months ago
- dMaSIF implementation for google colab☆32Updated 2 years ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆58Updated last year
- TMol☆38Updated this week
- Code for the paper "Learning to engineer protein flexibility".☆18Updated 2 months ago
- Public version for Distance-AF☆22Updated 2 weeks ago
- Clusters protein chains based on CA distance difference☆14Updated 4 months ago
- Build conformational representations of Intrinsically Disordered Proteins and Regions by a guided sampling of the protein torsion space☆23Updated 3 months ago