Genentech / equifoldLinks
Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation
☆121Updated 2 years ago
Alternatives and similar repositories for equifold
Users that are interested in equifold are comparing it to the libraries listed below
Sorting:
- A list of manuscripts/tools using diffusion on biological enttieis☆97Updated last year
- PINDER: The Protein INteraction Dataset and Evaluation Resource☆127Updated 8 months ago
- Protein structure datasets for machine learning.☆111Updated 2 months ago
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆127Updated 3 months ago
- EigenFold: Generative Protein Structure Prediction with Diffusion Models☆173Updated 2 years ago
- Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)☆210Updated last year
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆180Updated last year
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆101Updated 9 months ago
- Database of Interacting Protein Structures (DIPS)☆102Updated last year
- Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing☆87Updated last year
- The Enhanced Database of Interacting Protein Structures for Interface Prediction☆49Updated last year
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆98Updated 11 months ago
- Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation☆121Updated this week
- Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch☆160Updated 2 years ago
- Source code for RNA-FrameFlow: SE(3) Flow Matching for 3D RNA Backbone Design☆66Updated 2 weeks ago
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆78Updated last year
- Dataset and package for working with protein-protein interactions in 3D☆94Updated 2 months ago
- Attempt at reproduction of AlphaFold2☆95Updated 8 months ago
- Official implementation of "Generating 3D Molecules for Target Protein Binding" [ICML2022 Long Presentation]☆108Updated last year
- Implementation of FlowSite and HarmonicFlow from the paper "Harmonic Self-Conditioned Flow Matching for Multi-Ligand Docking and Binding …☆99Updated 11 months ago
- ☆108Updated 2 years ago
- Geometric Vector Perceptron --- a rotation-equivariant GNN for learning from biomolecular structure☆147Updated 4 years ago
- multi-objective protein design☆64Updated 2 weeks ago
- Comprehensive benchmarking of protein-ligand structure prediction methods. (ICML 2024 AI4Science)☆158Updated 3 months ago
- Code for our paper "Protein sequence design with a learned potential"☆79Updated last year
- Protein Design with Guided Discrete Diffusion☆132Updated last year
- Diffusion-based all-atom protein generative model.☆202Updated 4 months ago
- Official repository for discrete Walk-Jump Sampling (dWJS)☆55Updated last year
- Official repository of EnzymeFlow☆91Updated 7 months ago
- open source repository☆138Updated last year