Alternatives and similar repositories for lobster

Users that are interested in lobster are comparing it to the libraries listed below

• amyxlu / cheap-proteins
  Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…
  ☆145Updated 7 months ago
• martinez-zacharya / TRILL
  Sandbox for Deep-Learning based Computational Protein Design
  ☆119Updated 2 weeks ago
• oxpig / AntiFold
  Improved antibody structure-based design using inverse folding
  ☆144Updated 3 months ago
• NREL / EvoProtGrad
  Directed evolution of proteins in sequence space with gradients
  ☆93Updated last month
• anton-bushuiev / PPIRef
  Dataset and package for working with protein-protein interactions in 3D
  ☆98Updated 7 months ago
• BorgwardtLab / proteinshake
  Protein structure datasets for machine learning.
  ☆112Updated 7 months ago
• Genentech / equifold
  Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation
  ☆126Updated 2 years ago
• evo-design / protein-dpo
  Aligning protein generative models with experimental fitness
  ☆113Updated last month
• biolists / biodiffusion
  A list of manuscripts/tools using diffusion on biological enttieis
  ☆98Updated 2 years ago
• amyxlu / plaid
  All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins
  ☆115Updated 6 months ago
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆125Updated 3 weeks ago
• J-SNACKKB / FLIP
  A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
  ☆109Updated last year
• mims-harvard / ATOMICA
  Learning Universal Representations of Intermolecular Interactions with ATOMICA
  ☆191Updated 2 months ago
• Exscientia / abodybuilder3
  ☆71Updated last year
• debbiemarkslab / SeqDesign
  Protein design and variant prediction using autoregressive generative models
  ☆117Updated last year
• pinder-org / pinder
  PINDER: The Protein INteraction Dataset and Evaluation Resource
  ☆142Updated last year
• Graylab / GeoDock
  Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.
  ☆98Updated last year
• OpenProteinAI / PoET
  Inference code for PoET: A generative model of protein families as sequences-of-sequences
  ☆86Updated last year
• colbyford / PyMOLfold
  Plugin for folding sequences directly in PyMOL
  ☆108Updated 4 months ago
• programmablebio / pepmlm
  Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling
  ☆106Updated last month
• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆77Updated 3 months ago
• AstraZeneca / DiffAbXL
  The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…
  ☆89Updated 6 months ago
• SantiagoMille / germinal
  Codebase for Germinal, a broadly enabling generative pipeline for efficient generation of epitope-targeted de novo antibodies.
  ☆165Updated 2 weeks ago
• Graylab / IgLM
  Generative Language Modeling for Antibody Design
  ☆173Updated last year
• TencentAI4S / IgGM
  Official Implementation of IgGM
  ☆164Updated last week
• pengzhangzhi / faplm
  FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models
  ☆156Updated 4 months ago
• OpenBioML / protein-lm-scaling
  ☆58Updated last year
• chandar-lab / AMPLIFY
  ☆117Updated 4 months ago
• levinthal / Pallatom
  ☆128Updated 6 months ago
• WillHua127 / EnzymeFlow
  Official repository of EnzymeFlow
  ☆97Updated last year