Alternatives and similar repositories for lobster:

Users that are interested in lobster are comparing it to the libraries listed below

• amyxlu / plaid
  All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins
  ☆66Updated last week
• oxpig / AntiFold
  Improved antibody structure-based design using inverse folding
  ☆92Updated last month
• patrickbryant1 / Cfold
  Structure prediction of alternative protein conformations
  ☆74Updated 5 months ago
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆101Updated last month
• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆53Updated 3 weeks ago
• iambic-therapeutics / np-bench
  A benchmark for 3D biomolecular structure prediction models
  ☆52Updated 2 months ago
• NREL / EvoProtGrad
  Directed evolution of proteins in sequence space with gradients
  ☆81Updated 6 months ago
• lujiarui / Str2Str
  Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)
  ☆71Updated 11 months ago
• pinder-org / pinder
  PINDER: The Protein INteraction Dataset and Evaluation Resource
  ☆100Updated 3 months ago
• OpenBioML / protein-lm-scaling
  ☆57Updated 10 months ago
• amyxlu / cheap-proteins
  Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…
  ☆108Updated last month
• alexechu / protpardelle
  ☆66Updated last year
• AstraZeneca / DiffAbXL
  The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…
  ☆66Updated 3 months ago
• evo-design / protein-dpo
  Aligning protein generative models with experimental fitness
  ☆84Updated 4 months ago
• LPDI-EPFL / masif-neosurf
  MaSIF-neosurf: surface-based protein design for ternary complexes.
  ☆89Updated this week
• programmablebio / pepmlm
  Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling
  ☆47Updated 6 months ago
• Genentech / equifold
  Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation
  ☆120Updated 2 years ago
• biolists / biodiffusion
  A list of manuscripts/tools using diffusion on biological enttieis
  ☆96Updated last year
• Graylab / GeoDock
  Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.
  ☆88Updated 6 months ago
• anton-bushuiev / PPIRef
  Dataset and package for working with protein-protein interactions in 3D
  ☆90Updated last week
• Profluent-Internships / MMDiff
  Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion
  ☆55Updated 9 months ago
• dakpinaroglu / Frame2seq
  Structure-conditioned masked language modeling for protein sequence design
  ☆61Updated last year
• OpenProteinAI / PoET
  Inference code for PoET: A generative model of protein families as sequences-of-sequences
  ☆61Updated 9 months ago
• kirjner / GGS
  This repository implements Gibbs sampling with Graph-based Smoothing
  ☆37Updated 8 months ago
• BorgwardtLab / proteinshake
  Protein structure datasets for machine learning.
  ☆105Updated 7 months ago
• anton-bushuiev / PPIformer
  Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)
  ☆47Updated last month
• Kuhlman-Lab / evopro
  ☆72Updated last week
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆69Updated last month
• valence-labs / mtl_summer_school_2024
  ☆40Updated 8 months ago
• jproney / AF2Rank
  ☆99Updated 2 years ago