jbloomlab / SARS2-RBD-escape-calcLinks
SARS-CoV-2 RBD antibody escape calculator
☆12Updated 8 months ago
Alternatives and similar repositories for SARS2-RBD-escape-calc
Users that are interested in SARS2-RBD-escape-calc are comparing it to the libraries listed below
Sorting:
- Pyro models of SARS-CoV-2 variants☆78Updated last year
- antimicrobial peptide prediction in R☆33Updated 7 months ago
- Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…☆21Updated 3 months ago
- Observed substitution counts of SARS-CoV-2 compared to those expected under the mutation rates☆20Updated 9 months ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆37Updated 2 months ago
- Modeling whole bacterial genome as a sequence of proteins.☆44Updated 2 weeks ago
- Python Implementation of Codon Adaption Index☆37Updated 2 years ago
- The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.☆20Updated last year
- ☆43Updated 11 months ago
- ☆26Updated last year
- A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima☆57Updated 4 years ago
- ☆16Updated 2 years ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago
- Find common blocks and differences between DNA sequences☆42Updated 4 months ago
- ☆14Updated 9 years ago
- Protein Sequence Annotation with Language Models☆23Updated 2 months ago
- A high-fidelity E. coli RNA-seq compendium☆32Updated 4 years ago
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆27Updated 3 months ago
- Comprehensive Python client for the Uniprot REST API☆50Updated last month
- A Python API for managing genotype-phenotype map data☆12Updated last year
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆56Updated 4 months ago
- Metagenome analysis using the Kraken software suite☆32Updated 2 years ago
- Nanopore UMI-linked consensus sequencing☆16Updated 4 years ago
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆27Updated 7 months ago
- software for the analysis and visualization of deep mutational scanning data☆35Updated 2 years ago
- Bacterial Annotation by Learned Representation of Genes☆57Updated 4 years ago
- A package for designing activity-informed nucleic acid diagnostics for viruses.☆32Updated 2 years ago
- Diverse Genomic Embedding Benchmark☆46Updated 4 months ago
- A Rich renderable for viewing Multiple Sequence Alignments in the terminal.☆85Updated 3 years ago
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated 2 years ago