jbloomlab / SARS2-RBD-escape-calcLinks
SARS-CoV-2 RBD antibody escape calculator
☆12Updated 11 months ago
Alternatives and similar repositories for SARS2-RBD-escape-calc
Users that are interested in SARS2-RBD-escape-calc are comparing it to the libraries listed below
Sorting:
- Pyro models of SARS-CoV-2 variants☆77Updated last year
- ☆29Updated last year
- Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…☆22Updated 5 months ago
- Observed substitution counts of SARS-CoV-2 compared to those expected under the mutation rates☆21Updated 11 months ago
- antimicrobial peptide prediction in R☆33Updated 10 months ago
- Python Implementation of Codon Adaption Index☆37Updated 2 years ago
- ☆16Updated 2 years ago
- A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima☆60Updated 5 years ago
- Metagenome analysis using the Kraken software suite☆35Updated 3 years ago
- The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.☆20Updated last year
- ☆15Updated 9 years ago
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆36Updated 2 weeks ago
- A Rich renderable for viewing Multiple Sequence Alignments in the terminal.☆85Updated 3 years ago
- A package for designing activity-informed nucleic acid diagnostics for viruses.☆34Updated 2 years ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆38Updated 4 months ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆58Updated 7 months ago
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆28Updated 9 months ago
- Bacterial Annotation by Learned Representation of Genes☆58Updated 4 years ago
- Modeling whole bacterial genome as a sequence of proteins.☆72Updated last week
- Find common blocks and differences between DNA sequences☆42Updated 6 months ago
- Nanopore UMI-linked consensus sequencing☆16Updated 4 years ago
- software for the analysis and visualization of deep mutational scanning data☆34Updated 3 years ago
- ☆46Updated last year
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆27Updated last month
- DeepECtransformer☆28Updated 2 years ago
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated 2 years ago
- Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models☆12Updated 2 years ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago
- A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.☆35Updated 2 years ago
- A Python API for managing genotype-phenotype map data☆12Updated 2 years ago