SARS-CoV-2 RBD antibody escape calculator
☆12Nov 19, 2024Updated last year
Alternatives and similar repositories for SARS2-RBD-escape-calc
Users that are interested in SARS2-RBD-escape-calc are comparing it to the libraries listed below
Sorting:
- Observed substitution counts of SARS-CoV-2 compared to those expected under the mutation rates☆21Nov 8, 2024Updated last year
- Racmacs R package for performing antigenic cartography☆24Jun 27, 2024Updated last year
- Official repository for the paper "Learning from pre-pandemic data to forecast viral antibody escape"☆70Oct 11, 2023Updated 2 years ago
- A protein language model for learning the SARS-CoV-2 fitness landscape☆12Apr 22, 2025Updated 11 months ago
- ☆12Feb 15, 2023Updated 3 years ago
- ☆20Apr 25, 2023Updated 2 years ago
- Population Genomics in R workshop☆12Mar 24, 2024Updated last year
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 2 years ago
- snipit: summarise snps relative to your reference sequence☆168Jan 13, 2026Updated 2 months ago
- Phylogenetic pathway–dependent recognition of fixed substitutions and parallel mutations☆11Sep 18, 2025Updated 6 months ago
- VarSkip multiplex PCR designs for SARS-CoV-2 sequencing☆14Jun 14, 2022Updated 3 years ago
- ☆16May 12, 2023Updated 2 years ago
- Deep mutational scanning of the receptor-binding domain of SARS-CoV-2 Spike☆46Mar 3, 2022Updated 4 years ago
- ☆48Feb 13, 2026Updated last month
- Code for the paper "OneProt: Towards Multi-Modal Protein Foundation Models"☆22Oct 31, 2025Updated 4 months ago
- A Python API for managing genotype-phenotype map data☆12Aug 18, 2023Updated 2 years ago
- Inferring spatiotemporal dynamics of H5N1 influenza from sequence data☆10Sep 6, 2013Updated 12 years ago
- download stats of R packages☆14Apr 18, 2025Updated 11 months ago
- The Complete Python Antibody Library☆24Jan 28, 2026Updated last month
- rid☆23Aug 15, 2021Updated 4 years ago
- A nextflow pipeline with a GMS touch for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbio…☆10Jan 23, 2026Updated last month
- Retrieve HIVdb algorithm as XML and apply locally to HIV sequences☆13Mar 4, 2026Updated 2 weeks ago
- ☆13Feb 17, 2022Updated 4 years ago
- An Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders☆16Sep 10, 2024Updated last year
- Leaping through tree space: continuous phylogenetic inference for rooted and unrooted trees☆12Sep 6, 2023Updated 2 years ago
- Benchmark for Biophysical Sequence Optimization Algorithms☆20May 21, 2025Updated 10 months ago
- Some examples of how to do some core things in Git☆10Apr 12, 2019Updated 6 years ago
- SARs-CoV-2 Primer schemes☆16May 14, 2025Updated 10 months ago
- Simple phylogenetic trees in Julia to work with Diversity.jl - https://github.com/EcoJulia/Diversity.jl☆37Dec 18, 2025Updated 3 months ago
- Detecting recombination of viral lineages☆11Dec 23, 2025Updated 2 months ago
- Phylogenetics between and within hosts at once, all along the genome.☆50Oct 2, 2024Updated last year
- An R package for the analysis of infectious disease transmission data☆10Nov 8, 2021Updated 4 years ago
- A multi-algorithmic framework for phylogenetic inference☆14Nov 28, 2025Updated 3 months ago
- A tool for exploring large trees in the browser☆125Updated this week
- A SARS-CoV-2 Mutation Pattern Query Tool☆17Mar 21, 2023Updated 3 years ago
- A package and environment manager for R☆18Mar 8, 2024Updated 2 years ago
- An R Package for Integrated Analysis and Visualization of Microbiome Data☆18Feb 19, 2026Updated last month
- Results from a model of global SARS-CoV-2 lineage competition☆39Dec 17, 2025Updated 3 months ago
- R package for statistical inference of spatiotemporal partially observed Markov processes☆12Dec 21, 2024Updated last year