jbloomlab / SARS2-RBD-escape-calc
SARS-CoV-2 RBD antibody escape calculator
☆11Updated 9 months ago
Related projects: ⓘ
- ☆14Updated last year
- Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…☆16Updated 2 months ago
- Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models☆12Updated last year
- ☆20Updated 7 months ago
- A package for making tree-based visualizations for embedding vectors☆9Updated last year
- Python Implementation of Codon Adaption Index☆32Updated last year
- A Python3 script for removal of outlier sequences from a multiple sequence alignment (FASTA format).☆9Updated 2 years ago
- Code for LazyAF pipeline☆21Updated 7 months ago
- A package for designing activity-informed nucleic acid diagnostics for viruses.☆29Updated last year
- Nail is an Alignment Inference tooL☆30Updated last week
- Observed substitution counts of SARS-CoV-2 compared to those expected under the mutation rates☆19Updated 4 months ago
- antimicrobial peptide prediction in R☆27Updated 10 months ago
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆12Updated last month
- Bacterial Annotation by Learned Representation of Genes☆54Updated 3 years ago
- The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.☆17Updated 6 months ago
- Metagenome analysis using the Kraken software suite☆27Updated last year
- Peptide library design☆19Updated 4 years ago
- Interpretable genotype-phenotype landscape modeling☆33Updated 9 months ago
- ☆14Updated 8 years ago
- Ancestral Sequence Reconstruction in Python☆12Updated 5 years ago
- A Python API for managing genotype-phenotype map data☆11Updated last year
- Machine learning workflows for analyzing high-throughput protein data☆24Updated 7 years ago
- FASSO: Functional Annotations using Sequence and Structure Orthology☆9Updated last year
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆22Updated last year
- MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.☆43Updated last month
- Detecting Sequence Signals in Targeting Peptides Using Deep Learning☆12Updated 5 years ago
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆18Updated last year
- Find common blocks and differences between DNA sequences☆38Updated 2 years ago
- A collection of documented examples using TreeTime☆14Updated 5 years ago
- A high-fidelity E. coli RNA-seq compendium☆32Updated 3 years ago