jbloomlab / SARS2-RBD-escape-calcLinks
SARS-CoV-2 RBD antibody escape calculator
☆12Updated last year
Alternatives and similar repositories for SARS2-RBD-escape-calc
Users that are interested in SARS2-RBD-escape-calc are comparing it to the libraries listed below
Sorting:
- Observed substitution counts of SARS-CoV-2 compared to those expected under the mutation rates☆21Updated last year
- ☆16Updated 2 years ago
- Pyro models of SARS-CoV-2 variants☆77Updated last year
- Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…☆22Updated 8 months ago
- A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima☆63Updated 5 years ago
- Python Implementation of Codon Adaption Index☆37Updated 2 years ago
- ☆29Updated last year
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆30Updated last year
- antimicrobial peptide prediction in R☆33Updated last year
- Protein Sequence Annotation with Language Models☆25Updated last week
- ☆15Updated 9 years ago
- Modeling whole bacterial genome as a sequence of proteins.☆84Updated 2 months ago
- DeepECtransformer☆29Updated 2 years ago
- The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.☆20Updated last year
- Code for LazyAF pipeline☆21Updated last year
- Phylogenetic pathway–dependent recognition of fixed substitutions and parallel mutations☆11Updated 3 months ago
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated 2 months ago
- software for the analysis and visualization of deep mutational scanning data☆34Updated 3 years ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆27Updated 2 years ago
- Ancestral Sequence Reconstruction in Python☆14Updated 6 years ago
- RNA Structural Covariation Above Phylogenetic Expectation☆18Updated 3 weeks ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆31Updated 2 years ago
- Calculates pairwise sequence identity, similarity and normalized similarity score of proteins in a multiple sequence alignment.☆18Updated last year
- Nanopore UMI-linked consensus sequencing☆16Updated 4 years ago
- Python framework for doing ancestral sequence reconstruction☆42Updated last year
- A package for making tree-based visualizations for embedding vectors☆10Updated 2 years ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆61Updated 9 months ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆77Updated last month
- Metagenome analysis using the Kraken software suite☆35Updated 3 years ago
- Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models☆12Updated 3 years ago