Alternatives and similar repositories for Gimpute

Users that are interested in Gimpute are comparing it to the libraries listed below

• pgxcentre / region-plot
  A tool to plot significant regions of GWAS
  ☆30Updated 2 years ago
• saralpulit / gwas-scripts
  A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…
  ☆20Updated 7 years ago
• Nealelab / whole_genome_analysis_pipeline
  ☆19Updated 2 years ago
• naumenko-sa / bioscripts
  a bucket of bioinformatics scripts
  ☆13Updated 3 weeks ago
• xihaoli / MetaSTAAR
  An R package for performing MetaSTAAR procedure in whole-genome sequencing studies
  ☆23Updated 8 months ago
• Shicheng-Guo / HowtoBook
  Readme
  ☆10Updated 5 years ago
• Phillip-a-richmond / AnnotateVariants
  This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …
  ☆17Updated 2 years ago
• ksamocha / de_novo_scripts
  Script used to identify de novo variants from sequencing data.
  ☆12Updated 8 years ago
• n-mounier / bGWAS
  R package to perform Bayesian Genome-Wide Association Studies
  ☆40Updated last year
• twlab / TEProf2Paper
  TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data
  ☆26Updated 2 years ago
• abl0719 / ASElux
  ☆13Updated 5 years ago
• swvanderlaan / GWASToolKit
  A collection of scripts to run GWAS, regional, gene-oriented, or per-variant analyses.
  ☆18Updated 8 months ago
• bhattacharya-a-bt / isotwas
  ☆23Updated 6 months ago
• AndreasHeger / gat
  Genomic Association Tester
  ☆31Updated 2 years ago
• shuliliu / cattleGTEx
  The cattle Genotype-Tissue Expression atlas v1
  ☆26Updated 2 years ago
• ilarsf / gwasTools
  Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)
  ☆32Updated last month
• Nealelab / picopili
  Fork of ricopili for development of pipeline for family-based data
  ☆18Updated 3 weeks ago
• fhormoz / caviar
  ☆60Updated 3 years ago
• immunogenomics / HLA-TAPAS
  HLA-TAPAS pipeline for HLA association and fine-mapping studies
  ☆54Updated last year
• statgen / locuszoom-standalone
  Create regional association plots from GWAS or meta-analysis
  ☆61Updated 5 years ago
• jinghuazhao / TWAS-pipeline
  TWAS-pipeline
  ☆22Updated 4 years ago
• freeseek / gwaspipeline
  ☆40Updated 7 years ago
• kaustubhad / fastman
  An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.
  ☆39Updated 7 months ago
• ctsa / svtools
  Tools for processing and analyzing structural variants.
  ☆33Updated 9 years ago
• atgu / hgdp_tgp
  ☆42Updated last week
• francois-a / fastqtl
  Enhanced version of the FastQTL QTL mapper
  ☆67Updated 2 years ago
• CNSGenomics / impute-pipe
  Canonical SGE cluster genotype imputation pipeline
  ☆12Updated 9 years ago
• getian107 / SuSiEx
  Cross-population fine-mapping
  ☆37Updated 7 months ago
• WansonChoi / CookHLA
  An accurate and efficient HLA imputation method.
  ☆25Updated 2 years ago
• cgrace1978 / manhplot
  Manhattan++
  ☆28Updated last year