zhou-ran / workflows
snakemake-based workflows
☆12Updated 2 years ago
Alternatives and similar repositories for workflows:
Users that are interested in workflows are comparing it to the libraries listed below
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆19Updated 3 years ago
- RNA editing tests☆16Updated 4 years ago
- Process m6A/MeRIP-seq data in a single or batch job mode☆20Updated 4 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆23Updated 7 months ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆22Updated 2 months ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆23Updated last year
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆56Updated last year
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- ☆17Updated 4 years ago
- ATAC-seq processing pipeline☆32Updated 2 years ago
- Pipeline for using IDR to produce a set of peaks given two replicate eCLIP peaks☆9Updated 3 years ago
- Arabidopsis RNA_-seq downstream analysis shiny app☆31Updated 5 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- scripts for analyzing the CVDC data.☆17Updated 5 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆43Updated 7 years ago
- CLIP-seq Analysis of Multi-mapped reads☆29Updated 3 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆38Updated 3 years ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆50Updated 2 years ago
- Tutorial Website☆57Updated 4 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- ☆24Updated last year
- SEASTAR - Systematic Evaluation of Alternative transcription STArt site in RNA☆13Updated 7 years ago
- ☆32Updated 9 months ago
- An R package to time somatic mutations☆61Updated 4 years ago
- DCC/DAC methylation pipeline source☆55Updated 4 years ago
- tools to find circRNAs in RNA-seq data☆42Updated 7 years ago
- Detection of differential translated genes using Ribo-seq☆15Updated 3 years ago