snakemake-based workflows
☆12Jul 20, 2022Updated 3 years ago
Alternatives and similar repositories for workflows
Users that are interested in workflows are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Model-based analysis of APA using 3' end-linked reads☆12Aug 14, 2021Updated 4 years ago
- APAlyzer is a toolkit for bioinformatic analysis of alternative polyadenylation (APA) events using RNA sequencing data. Our main approach…☆12Dec 2, 2024Updated last year
- polyApipe☆19Feb 10, 2025Updated last year
- RNA-seq Quantification of Alternative Polyadenylation☆51Mar 21, 2026Updated 3 weeks ago
- ☆20Sep 28, 2019Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Piranha is a peak-caller for CLIP- and RIP-seq data☆20Feb 7, 2018Updated 8 years ago
- ☆21Aug 26, 2024Updated last year
- R markdown notebooks for the Tabula Muris network analysis in Iacono et al. (2019)☆12Jun 30, 2021Updated 4 years ago
- ☆12Jul 25, 2019Updated 6 years ago
- ☆16Jul 9, 2024Updated last year
- A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data☆16Jun 17, 2020Updated 5 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆63Sep 12, 2023Updated 2 years ago
- DaPars(Dynamic analysis of Alternative PolyAdenylation from RNA-seq)☆52Oct 16, 2022Updated 3 years ago
- Identify and correct invalid gene symbols☆62Nov 16, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- genomic variant frequency estimation☆11Sep 7, 2025Updated 7 months ago
- CWL+Singularity implementation of an RNA editing workflow☆40Dec 18, 2020Updated 5 years ago
- Study of TE evolution in a population of genomes☆10Dec 11, 2023Updated 2 years ago
- An Example of Subgenome Phasing for Complex Allopolyploidy☆15Nov 6, 2025Updated 5 months ago
- piRNA pipeline collection developed in the Zamore Lab and ZLab in UMass Med School☆64Jun 22, 2025Updated 9 months ago
- A collection of bioinformatics data analysis notebooks focused on providing examples of current best practices in sequencing data analysi…☆16Apr 1, 2026Updated last week
- Mapping 3′UTR alternative polyadenylation quantitative trait loci through population-scale transcriptomic and genomic data☆14Mar 15, 2023Updated 3 years ago
- This computational method has been published in BMC genomics as: "Identifying branch-specific positive selection throughout the regulato…☆17Updated this week
- ☆14May 22, 2025Updated 10 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types☆39Oct 13, 2021Updated 4 years ago
- Programs used in the lab for various tasks☆14Mar 5, 2023Updated 3 years ago
- Padlock design pipeline for multiplexed assay with multiple probes per target in cDNA-based expression profiling☆15Jul 11, 2024Updated last year
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆29Feb 12, 2021Updated 5 years ago
- A Shiny-based framework to analyze and visualize interactively genomic data☆11May 11, 2023Updated 2 years ago
- Analyses of Ribo-seq rRNA fragments for Differential Ribosome Heterogeneity and Collision predictions☆12Mar 31, 2026Updated last week
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Sep 5, 2025Updated 7 months ago
- R interface to megadepth: BigWig and BAM related utilities☆13Mar 31, 2026Updated last week
- APA Regression Net - Predict and Engineer Alternative Polyadenylation☆41Oct 1, 2021Updated 4 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Bullseye analysis pipeline for DART-seq analysis☆15Feb 28, 2026Updated last month
- ☆13Apr 1, 2026Updated last week
- Find CpG islands in genome☆11Mar 27, 2020Updated 6 years ago
- reproduce the functional enrichment analysis presented in GTEx paper using clusterProfiler/DOSE☆33Jul 6, 2021Updated 4 years ago
- Lightweight Alignment Based Resolution of Alternative Three Prime Ends☆10Jan 26, 2024Updated 2 years ago
- Exploring Isoform-specific interactions☆13Sep 16, 2025Updated 6 months ago
- Paired Replicate Analysis of Allelic Differential Splicing Events☆12Feb 21, 2023Updated 3 years ago