Interactive visualization method for ancestral recombination graphs
☆21May 11, 2026Updated 3 months ago
Alternatives and similar repositories for tskit_arg_visualizer
Users that are interested in tskit_arg_visualizer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Parsimony on tree sequences☆13Jun 27, 2025Updated last year
- A set of tutorials for msprime and tskit.☆21Jun 19, 2026Updated last month
- Sampling and inference of genealogies with recombination☆61Updated this week
- Simulate ARGs and genomic sequence data using population genetic models☆217Updated this week
- faster haplotype-based admixture inference and dating software☆12Nov 25, 2025Updated 8 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Fast population genetics clustering.☆33Updated this week
- ☆14Jun 17, 2026Updated last month
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆17Nov 25, 2024Updated last year
- A script that parses the OrthoFinder output and keeps only the orthogroups that meet specific criteria☆19Oct 14, 2020Updated 5 years ago
- ancestral reconstruction and likelihood analysis for CRISPR spacer arrays☆11May 7, 2025Updated last year
- ☆11Updated this week
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆15Oct 1, 2021Updated 4 years ago
- Tool for drawing gene structures from genome annotation files.☆22Jun 20, 2026Updated last month
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14May 1, 2023Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Fast Neighbor-Joining and other distance-based methods for phylogenetics☆16Jun 21, 2024Updated 2 years ago
- adaptive genome assembly using nanopore sequencing☆27Jul 24, 2026Updated 3 weeks ago
- A Python package for landscape genomic simulation☆13Dec 15, 2025Updated 8 months ago
- Reduce genome assembly redundancy using shared mapped k-mer method.☆15Apr 28, 2025Updated last year
- A comprehensive telomere annotation tool for genome assemblies and graphs.☆18Aug 5, 2026Updated last week
- ☆23Jan 13, 2026Updated 7 months ago
- Population-scale Ancestral Recombination Graph (ARG) library☆189Updated this week
- Domain based annotation of transposable elements☆25Jul 21, 2026Updated 3 weeks ago
- High throughput python tool for mining and analysis of gene duplications.☆16Jul 30, 2026Updated 2 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- The tools are used for displaying hic signal of genome☆26Jan 4, 2021Updated 5 years ago
- Probability [Instructor: Parsiad Azimzadeh] (University of Michigan, Winter 2018)☆13Aug 7, 2018Updated 8 years ago
- ☆19Jul 12, 2026Updated last month
- Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language☆88Updated this week
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆25Jul 20, 2026Updated 3 weeks ago
- A javascript library for building, exploring, and sharing spatially structured models of biological systems☆16May 26, 2026Updated 2 months ago
- ggideogram is a ggplot2 extension package for drawing chromosome diagrams☆18Nov 29, 2024Updated last year
- Rust bindings for the tskit library☆18Aug 1, 2026Updated last week
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆26Mar 11, 2026Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- JTK -- a regional diploid genome assembler☆26Apr 22, 2026Updated 3 months ago
- post processing of bacterial pangenome gene presence/absence matrices☆67Jan 19, 2026Updated 6 months ago
- A Hi-C scaffolding method☆22Dec 22, 2021Updated 4 years ago
- A software suite for accurate identification, annotation, translation, and feature characterization of annotate transcripts.☆24Sep 1, 2021Updated 4 years ago
- Chromax is a breeding simulator based on JAX.☆10Jun 6, 2025Updated last year
- Lecture on viral phylodynamics☆11Oct 28, 2021Updated 4 years ago
- Gmove is a gene prediction tool☆21Oct 9, 2024Updated last year