Interactive visualization method for ancestral recombination graphs
☆22Oct 21, 2026Updated last week
Alternatives and similar repositories for tskit_arg_visualizer
Users that are interested in tskit_arg_visualizer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A set of tutorials for msprime and tskit.☆21Sep 30, 2026Updated last month
- Parsimony on tree sequences☆13Jun 27, 2025Updated last year
- Sampling and inference of genealogies with recombination☆68Aug 21, 2026Updated 2 months ago
- Population-scale Ancestral Recombination Graph (ARG) library☆192Oct 23, 2026Updated last week
- Serial of Similarity Matrix for subgenome partition☆11Feb 6, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Annotation Extraction Genomic Integration Suite (AEGIS) is a powerful and flexible Python-based suite for the manipulation, analysis, and…☆15Updated this week
- Linear mixed models on ARGs☆18Jan 16, 2026Updated 9 months ago
- JTK -- a regional diploid genome assembler☆27Apr 22, 2026Updated 6 months ago
- Improved long-read assembly by preserving contained reads☆29Aug 22, 2024Updated 2 years ago
- Panaln: Indexing pangenome for read alignment☆10Apr 16, 2025Updated last year
- Phylogenetics toolkit for the PyData Ecosystem☆11May 10, 2024Updated 2 years ago
- Tool to flag foldback and chimeric artifacts in long-read sequence alignment files☆48Oct 25, 2026Updated last week
- adaptive genome assembly using nanopore sequencing☆27Sep 11, 2026Updated last month
- Simulate ARGs and genomic sequence data using population genetic models☆219Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆13Jul 8, 2026Updated 3 months ago
- ☆12Jul 24, 2026Updated 3 months ago
- PHasing Reads in Areas Of Homozygosity☆14Feb 12, 2025Updated last year
- A newly designed version of Bamsnap with Long Read Support (LRS) which inspired by bamsnap (https://github.com/parklab/bamsnap)☆14Oct 13, 2026Updated 3 weeks ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆17Sep 17, 2025Updated last year
- Domain based annotation of transposable elements☆25Jul 21, 2026Updated 3 months ago
- A comprehensive C++ telomere annotation tool for genome assemblies and reads.☆19Oct 2, 2026Updated last month
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆20Dec 5, 2023Updated 2 years ago
- MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…☆12Feb 26, 2026Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- The Arabidopsis pancentromere evolves through rapid cycles of satellite homogenization and centrophilic ATHILA retrotransposon invasion☆10Apr 29, 2023Updated 3 years ago
- faster haplotype-based admixture inference and dating software☆12Nov 25, 2025Updated 11 months ago
- ggideogram is a ggplot2 extension package for drawing chromosome diagrams☆20Nov 29, 2024Updated last year
- A Rust-Based suite of utilities for ultra-fast genomic feature extraction☆47Dec 18, 2025Updated 10 months ago
- A filter algorithm with program to filter an alignment or mapping file☆13May 15, 2025Updated last year
- The tools are used for displaying hic signal of genome☆25Jan 4, 2021Updated 5 years ago
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆25Oct 22, 2026Updated last week
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆26Mar 11, 2026Updated 7 months ago
- scripts for a Genetics Map software☆11Jan 7, 2018Updated 8 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- ancestral reconstruction and likelihood analysis for CRISPR spacer arrays☆11May 7, 2025Updated last year
- A Tool for low Coverage HiFi Data Assembly☆44Dec 27, 2025Updated 10 months ago
- Fast population genetics clustering.☆37Updated this week
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆12Dec 7, 2022Updated 3 years ago
- De novo clustering of long transcript reads into genes☆24Dec 15, 2025Updated 10 months ago
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆30Oct 17, 2026Updated 2 weeks ago