Alternatives and similar repositories for dna2vec

Users that are interested in dna2vec are comparing it to the libraries listed below

• kipoi / models
  Model zoo for genomics
  ☆167Updated 11 months ago
• uci-cbcl / DanQ
  A hybrid convolutional and recurrent neural network for predicting the function of DNA sequences
  ☆158Updated 8 years ago
• BIMSBbioinfo / janggu
  Deep learning infrastructure for genomics
  ☆258Updated 3 years ago
• Bjoux2 / DeepLearning-in-Bioinformatics
  For anyone who are eager to applying deep learning in bioinformatics!
  ☆123Updated 6 years ago
• FunctionLab / selene
  a framework for training sequence-level deep learning networks
  ☆383Updated 6 months ago
• kundajelab / tfmodisco
  TF MOtif Discovery from Importance SCOres
  ☆143Updated last year
• QData / DeepChrome
  Bioinformatics16: DeepChrome: Deep-learning for predicting gene expression from histone modifications
  ☆63Updated 4 years ago
• FunctionLab / ExPecto
  predicting expression effects of human genome variants ab initio from sequence
  ☆128Updated 4 months ago
• jisraeli / DeepBind
  Training and testing of DeepBind models.
  ☆95Updated 9 years ago
• aquaskyline / Clairvoyante
  Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing
  ☆170Updated last year
• openvax / mhcflurry
  Peptide-MHC I binding affinity prediction
  ☆208Updated last month
• Illumina / PrimateAI
  deep residual neural network for classifying the pathogenicity of missense mutations.
  ☆112Updated 3 years ago
• davek44 / Basset
  Convolutional neural network analysis for predicting DNA sequence activity.
  ☆260Updated 4 years ago
• kundajelab / bpnet
  Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them
  ☆156Updated 10 months ago
• kipoi / kipoi
  Kipoi's model zoo API
  ☆236Updated last year
• budach / pysster
  pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks
  ☆86Updated 5 years ago
• ehsanasgari / Deep-Proteomics
  ☆51Updated 4 years ago
• debbiemarkslab / DeepSequence
  A generative latent variable model for biological sequence families.
  ☆221Updated 3 years ago
• greenelab / tybalt
  Training and evaluating a variational autoencoder for pan-cancer gene expression data
  ☆170Updated 6 years ago
• mdshw5 / pyfaidx
  Efficient pythonic random access to fasta subsequences
  ☆473Updated 3 weeks ago
• google / deepconsensus
  DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) …
  ☆240Updated 3 months ago
• calico / basenji
  Sequential regulatory activity predictions with deep convolutional neural networks.
  ☆436Updated last month
• deeptools / pyBigWig
  A python extension for quick access to bigWig and bigBed files
  ☆232Updated 5 months ago
• Genentech / gReLU
  gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.
  ☆264Updated 2 weeks ago
• bm2-lab / DeepCRISPR
  ☆62Updated 2 years ago
• vanessajurtz / lasagne4bio
  ☆107Updated 7 years ago
• gecrooks / weblogo
  WebLogo 3: Sequence Logos redrawn
  ☆153Updated last month
• vanheeringen-lab / genomepy
  genes and genomes at your fingertips
  ☆393Updated last month
• kishwarshafin / pepper
  PEPPER-Margin-DeepVariant
  ☆249Updated last year
• songlab-cal / gpn
  Genomic Pre-trained Network
  ☆270Updated 2 months ago