Alternatives and similar repositories for dna2vec:

Users that are interested in dna2vec are comparing it to the libraries listed below

• kipoi / models
  Model zoo for genomics
  ☆166Updated 6 months ago
• BIMSBbioinfo / janggu
  Deep learning infrastructure for genomics
  ☆256Updated 3 years ago
• Bjoux2 / DeepLearning-in-Bioinformatics
  For anyone who are eager to applying deep learning in bioinformatics!
  ☆122Updated 6 years ago
• FunctionLab / ExPecto
  predicting expression effects of human genome variants ab initio from sequence
  ☆125Updated this week
• budach / pysster
  pysster: Learning Sequence And Structure Motifs In Biological Sequences Using Convolutional Neural Networks
  ☆86Updated 5 years ago
• FunctionLab / selene
  a framework for training sequence-level deep learning networks
  ☆378Updated last month
• kundajelab / tfmodisco
  TF MOtif Discovery from Importance SCOres
  ☆132Updated last year
• uci-cbcl / DanQ
  A hybrid convolutional and recurrent neural network for predicting the function of DNA sequences
  ☆156Updated 8 years ago
• jisraeli / DeepBind
  Training and testing of DeepBind models.
  ☆92Updated 9 years ago
• kundajelab / bpnet
  Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them
  ☆148Updated 5 months ago
• bioinform / neusomatic
  NeuSomatic: Deep convolutional neural networks for accurate somatic mutation detection
  ☆167Updated 3 years ago
• aquaskyline / Clairvoyante
  Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing
  ☆170Updated last year
• kyu999 / biovec
  A new approach for representing biological sequences
  ☆99Updated 4 months ago
• bm2-lab / DeepCRISPR
  ☆59Updated last year
• Lattice-Automation / seqfold
  nucleic acid folding
  ☆87Updated 5 months ago
• kipoi / kipoi
  Kipoi's model zoo API
  ☆235Updated 9 months ago
• Illumina / PrimateAI
  deep residual neural network for classifying the pathogenicity of missense mutations.
  ☆114Updated 3 years ago
• calico / basenji
  Sequential regulatory activity predictions with deep convolutional neural networks.
  ☆422Updated 8 months ago
• gecrooks / weblogo
  WebLogo 3: Sequence Logos redrawn
  ☆148Updated last month
• debbiemarkslab / DeepSequence
  A generative latent variable model for biological sequence families.
  ☆212Updated 2 years ago
• QData / DeepChrome
  Bioinformatics16: DeepChrome: Deep-learning for predicting gene expression from histone modifications
  ☆62Updated 3 years ago
• deeptools / pyBigWig
  A python extension for quick access to bigWig and bigBed files
  ☆222Updated last week
• vanessajurtz / lasagne4bio
  ☆107Updated 6 years ago
• JJAlmagro / subcellular_localization
  ☆58Updated 7 years ago
• google / deepconsensus
  DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) …
  ☆233Updated 3 months ago
• guma44 / GEOparse
  Python library to access Gene Expression Omnibus Database (GEO)
  ☆148Updated 6 months ago
• songlab-cal / gpn
  Genomic Pre-trained Network
  ☆218Updated this week
• kipoi / kipoiseq
  Standard set of data-loaders for training and making predictions for DNA sequence-based models.
  ☆81Updated 4 months ago
• ehsanasgari / Deep-Proteomics
  ☆51Updated 4 years ago
• openvax / mhcflurry
  Peptide-MHC I binding affinity prediction
  ☆199Updated 2 months ago